41bbd268df98df338d98b6b98c62ab595d85aff1
braney
  Mon May 4 14:19:12 2020 -0700
don't print out conf field in rnaStruct tables if not present.   Added
link to PseudoViewer

diff --git src/hg/inc/rnaSecStr.h src/hg/inc/rnaSecStr.h
index 3cf6193..38a86bb 100644
--- src/hg/inc/rnaSecStr.h
+++ src/hg/inc/rnaSecStr.h
@@ -15,31 +15,35 @@
     {
     struct rnaSecStr *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome or FPC contig */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of item */
     unsigned score;	/* Score from 0-1000 */
     char strand[2];	/* + or - */
     unsigned size;	/* Size of element. */
     char *secStr;	/* Parentheses and '.'s which define the secondary structure */
     double *conf;	/* Confidence of secondary-structure annotation per position (0.0-1.0). */
     };
 
 struct rnaSecStr *rnaSecStrLoad(char **row);
 /* Load a rnaSecStr from row fetched with select * from rnaSecStr
- * from database.  Dispose of this with rnaSecStrFree(). */
+ * from database. Ignores conf column if present.  Dispose of this with rnaSecStrFree(). */
+
+struct rnaSecStr *rnaSecStrLoadConf(char **row);
+/* Load a rnaSecStr from row fetched with select * from rnaSecStr
+ * from database. Loads conf column.  Dispose of this with rnaSecStrFree(). */
 
 struct rnaSecStr *rnaSecStrLoadAll(char *fileName);
 /* Load all rnaSecStr from whitespace-separated file.
  * Dispose of this with rnaSecStrFreeList(). */
 
 struct rnaSecStr *rnaSecStrLoadAllByChar(char *fileName, char chopper);
 /* Load all rnaSecStr from chopper separated file.
  * Dispose of this with rnaSecStrFreeList(). */
 
 #define rnaSecStrLoadAllByTab(a) rnaSecStrLoadAllByChar(a, '\t');
 /* Load all rnaSecStr from tab separated file.
  * Dispose of this with rnaSecStrFreeList(). */
 
 struct rnaSecStr *rnaSecStrCommaIn(char **pS, struct rnaSecStr *ret);
 /* Create a rnaSecStr out of a comma separated string.