dea81fb17cc857a898e9caebeadb93b64ded61c0
braney
  Tue May 5 12:53:39 2020 -0700
get the Short Match track to recognize RNA.

diff --git src/inc/dnautil.h src/inc/dnautil.h
index d509e88..377ad69 100644
--- src/inc/dnautil.h
+++ src/inc/dnautil.h
@@ -85,30 +85,33 @@
  * to opposite strand. */
 void reverseIntRange(int *pStart, int *pEnd, int size);
 
 /* Switch start/end (zero based half open) coordinates
  * to opposite strand. */
 void reverseUnsignedRange(unsigned *pStart, unsigned *pEnd, int size); 
 
 char *reverseComplementSlashSeparated(char *alleleStr);
 /* Given a slash-separated series of sequences (a common representation of variant alleles),
  * returns a slash-sep series with the reverse complement of each sequence (if it is a
  * nucleotide sequence), also reversing the order of sequences. */
 
 enum dnaCase {dnaUpper,dnaLower,dnaMixed,};
 /* DNA upper, lower, or mixed case? */
 
+/* Convert U's to T's */
+void toDna(DNA *dna);
+
 /* Convert T's to U's */
 void toRna(DNA *dna);
 
 int cmpDnaStrings(DNA *a, DNA *b);
 /* Compare using screwy non-alphabetical DNA order TCGA */
 
 typedef char Codon; /* Our codon type. */
 
 /* Return single letter code (upper case) for protein.
  * Returns X for bad input, 0 for stop codon.
  * The "Standard" Code */
 AA lookupCodon(DNA *dna); 
 
 AA lookupUniqCodon(DNA *dna);