41bbd268df98df338d98b6b98c62ab595d85aff1
braney
  Mon May 4 14:19:12 2020 -0700
don't print out conf field in rnaStruct tables if not present.   Added
link to PseudoViewer

diff --git src/hg/inc/rnaSecStr.h src/hg/inc/rnaSecStr.h
index 3cf6193..38a86bb 100644
--- src/hg/inc/rnaSecStr.h
+++ src/hg/inc/rnaSecStr.h
@@ -1,68 +1,72 @@
 /* rnaSecStr.h was originally generated by the autoSql program, which also 
  * generated rnaSecStr.c and rnaSecStr.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2005 The Regents of the University of California 
  * See README in this or parent directory for licensing information. */
 
 #ifndef RNASECSTR_H
 #define RNASECSTR_H
 
 #define RNASECSTR_NUM_COLS 9
 
 struct rnaSecStr
 /* Browser extensible data */
     {
     struct rnaSecStr *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome or FPC contig */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of item */
     unsigned score;	/* Score from 0-1000 */
     char strand[2];	/* + or - */
     unsigned size;	/* Size of element. */
     char *secStr;	/* Parentheses and '.'s which define the secondary structure */
     double *conf;	/* Confidence of secondary-structure annotation per position (0.0-1.0). */
     };
 
 struct rnaSecStr *rnaSecStrLoad(char **row);
 /* Load a rnaSecStr from row fetched with select * from rnaSecStr
- * from database.  Dispose of this with rnaSecStrFree(). */
+ * from database. Ignores conf column if present.  Dispose of this with rnaSecStrFree(). */
+
+struct rnaSecStr *rnaSecStrLoadConf(char **row);
+/* Load a rnaSecStr from row fetched with select * from rnaSecStr
+ * from database. Loads conf column.  Dispose of this with rnaSecStrFree(). */
 
 struct rnaSecStr *rnaSecStrLoadAll(char *fileName);
 /* Load all rnaSecStr from whitespace-separated file.
  * Dispose of this with rnaSecStrFreeList(). */
 
 struct rnaSecStr *rnaSecStrLoadAllByChar(char *fileName, char chopper);
 /* Load all rnaSecStr from chopper separated file.
  * Dispose of this with rnaSecStrFreeList(). */
 
 #define rnaSecStrLoadAllByTab(a) rnaSecStrLoadAllByChar(a, '\t');
 /* Load all rnaSecStr from tab separated file.
  * Dispose of this with rnaSecStrFreeList(). */
 
 struct rnaSecStr *rnaSecStrCommaIn(char **pS, struct rnaSecStr *ret);
 /* Create a rnaSecStr out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new rnaSecStr */
 
 void rnaSecStrFree(struct rnaSecStr **pEl);
 /* Free a single dynamically allocated rnaSecStr such as created
  * with rnaSecStrLoad(). */
 
 void rnaSecStrFreeList(struct rnaSecStr **pList);
 /* Free a list of dynamically allocated rnaSecStr's */
 
 void rnaSecStrOutput(struct rnaSecStr *el, FILE *f, char sep, char lastSep);
 /* Print out rnaSecStr.  Separate fields with sep. Follow last field with lastSep. */
 
 #define rnaSecStrTabOut(el,f) rnaSecStrOutput(el,f,'\t','\n');
 /* Print out rnaSecStr as a line in a tab-separated file. */
 
 #define rnaSecStrCommaOut(el,f) rnaSecStrOutput(el,f,',',',');
 /* Print out rnaSecStr as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* RNASECSTR_H */