5b34d60e26db619bd854dfb196fc251a09f973d7 brianlee Thu Apr 23 13:13:03 2020 -0700 using id instead of name for html anchors diff --git src/hg/htdocs/training/index.html src/hg/htdocs/training/index.html index 9655cbc..0d04994 100755 --- src/hg/htdocs/training/index.html +++ src/hg/htdocs/training/index.html @@ -137,31 +137,31 @@ <a href = "../contacts.html#queries" target = "_blank">mailing list</a>. Along the way we try to show you interesting features of the Browser you may not have found on your own. </p> <p> Visit our <a href="https://www.youtube.com/channel/UCQnUJepyNOw0p8s2otX4RYQ/videos" target="_blank" style="background-color:yellow;"> YouTube channel</a> or use the links below. </p> <!-- Left column of vids --> <!-- # this div tag indents, but I don't want it to!!!! --> <div class="row"> <div class="col-md-6"> -<h2 style="background-color:#dde6ee; color:black;"> Video tutorials </h2> +<h2 id="videos" style="background-color:#dde6ee; color:black;"> Video tutorials </h2> <ul> <li> Browser Basics, Part One: <a class="toc" href="https://www.youtube.com/watch?v=NBDMNv2KFik&feature=youtu.be&list=UUQnUJepyNOw0p8s2otX4RYQ" target=_blank> Getting around in the Browser</a>. [ <a href = "vids/transcript17.pdf" target = _blank>transcript</a> ]</li> <li> <img class="gbsInlineImg" style="border:0px" src="../images/new.jpg" alt="new icon"> Browser Basics, Part Two: <a class="toc" href="https://www.youtube.com/watch?v=cYys5iXN0NY&feature=youtu.be&list=UUQnUJepyNOw0p8s2otX4RYQ" target=_blank> Configuring the Browser</a>. @@ -300,112 +300,108 @@ <a href="ashg2014">Step-by-step tutorial presented at ASHG 2014 annual meeting</a> - includes Custom Tracks and Table Browser queries with and without filters.</li> </ul> </div> <h3>External resources</h3> <ul> <li> <a href="http://www.lifescied.org/cgi/content/full/9/2/98" target=_blank>Teaching bioinformatics and neuroinformatics by using free web-based tools</a> - student-level tutorial that demonstrates the combined use of several major bioinformatic tools (including the UCSC Genome Browser) in answering a series of related research questions</li> </ul> -<a name="guides"</a> -<h2>User's guides for tools in the Genome Browser</h2> +<h2 id="guides">User's guides for tools in the Genome Browser</h2> <div class="row"> <div class="col-md-6"> <ul> <li><a href="../goldenPath/help/hgTracksHelp.html">Genome Browser</a></li> <li><a href="../goldenPath/help/hgTracksHelp.html#CustomTracks">Custom Tracks</a></li> <li><a href="../goldenPath/help/hgTrackHubHelp.html">Track Hubs</a></li> <li><a href="../goldenPath/help/hgSessionHelp.html">Sessions</a></li> <li><a href="../goldenPath/help/hgTablesHelp.html">Table Browser</a></li> <li><a href="../goldenPath/help/hgIntegratorHelp.html">Data Integrator</a></li> </ul> </div> <!-- end column --> <div class="col-md-6"> <ul> <li><a href="../goldenPath/help/hgGeneGraph.html">Gene and Pathways Interactions</a></li> <li><a href="../cgi-bin/hgVai#intro">Variant Annotation Integrator</a></li> <li><a href="../goldenPath/help/hgGenomeHelp.html">Genome Graphs</a></li> <li><a href="../goldenPath/help/hgNearHelp.html">Gene Sorter</a></li> <li><a href="../goldenPath/help/gbib.html">Genome Browser in a Box (GBiB)</a></li> <li><a href="../goldenPath/help/gbic.html">Genome Browser in the Cloud (GBiC)</a></li> </ul> </div> <!-- end column --> </div> <!-- end row --> -<h2>Contact and mailing list information</h2> +<h2 id="contact">Contact and mailing list information</h2> <ul> <li> <a href="../contacts.html">Genome Browser contact information</a></li> <li> <a href="http://groups.google.com/a/soe.ucsc.edu/group/genome?hl=en">Genome Browser mailing list</a> (searchable interactive discussion forum)</li> <li> <a href="../FAQ">Genome Browser FAQs</a></li> </ul> <h2>Mirroring and source code</h2> <ul> <li> <a href="../mirror.html">Genome Browser mirror sites</a></li> <li> <a href="../FAQ/FAQlicense.html#license3">Obtaining the Genome Browser source code</a></li> </ul> <h2>Associated publications and announcements</h2> <ul> <li> <a href="../goldenPath/pubs.html">Selected Genome Browser publications</a> <li> <a href="../goldenPath/newsarch.html">Genome Browser news archives</a> </ul> -<a name="help"</a> -<h2>Various Help pages for parts of the Genome Browser</h2> +<h2 id="help">Various Help pages for parts of the Genome Browser</h2> <div class="row"> <div class="col-md-3"> <ul> <li><a href="../goldenPath/help/query.html">Querying the Genome Browser</a></li> <li><a href="../goldenPath/help/hgWiggleTrackHelp.html">Configuring graph-based tracks</a></li> <li><a href="../goldenPath/help/multiView.html">Configuring Subtracks</a></li> <li><a href="../goldenPath/help/hgBamTrackHelp.html">Configuring BAM tracks</a></li> <li><a href="../goldenPath/help/hgVcfTrackHelp.html">Configuring VCF tracks</a></li> <li><a href="../goldenPath/help/hgHicTrackHelp.html">Configuring Hi-C heatmaps</a></li> <li><a href="../goldenPath/help/hgBaseLabel.html">Base Coloring for Alignment Tracks</a></li> <li><a href="../goldenPath/help/hgCodonColoring.html">Codon Coloring for Gene Tracks</a></li> <li><a href="../goldenPath/help/hgCodonColoringMrna.html">Codon and Base Coloring for Alignments</a></li> </ul> </div> <!-- end column --> <div class="col-md-3"> <ul> <li><a href="../goldenPath/help/trackSearch.html">Track Search</a></li> <li><a href="../goldenPath/help/fileSearch.html">File Search</a></li> <li><a href="../goldenPath/help/mysql.html">MySQL access</a></li> <li><a href="../goldenPath/help/multiRegionHelp.html">Multi-Region Display</a></li> <li><a href="../goldenPath/help/liftOver.html">LiftOver tracks</a></li> <li><a href="../goldenPath/help/iupac.html">IUPAC codes</a></li> <li><a href="../goldenPath/help/genomeEuro.html">Asia and Euro Mirror</a></li> <li><a href="../goldenPath/help/mirror.html">Overview Browser Mirror Installation</a></li> <li><a href="../goldenPath/help/mirrorManual.html">Manual Browser Mirror Installation</a></li> </ul> - </div> + </div> <!-- end column --> <div class="col-md-3"> <ul> <li><a href="../goldenPath/help/trackDb/trackDbHub.html">Track Hub Database Definitions</a></li> <li><a href="http://genomewiki.ucsc.edu/index.php/Assembly_Hubs">Assembly Hub Wiki</a></li> <li><a href="../goldenPath/help/twoBit.html">TwoBit Sequence Archives</a></li> <li><a href="../goldenPath/help/trix.html">Building Trix Indices</a></li> <li><a href="../goldenPath/help/haplotypes.html">Gene Haplotype Alleles</a></li> <li><a href="../goldenPath/help/hgRegMotifHelp.html">Motif Display Help Page</a></li> <li><a href="../goldenPath/help/hgIndelDisplay.html">Alignment Insertion/Deletion Display</a></li> <li><a href="../FAQ/FAQformat.html">Data Formats Page</a></li> </ul> </div> <!-- end column --> </div> <!-- end row --> - - <!--#include virtual="$ROOT/inc/gbPageEnd.html" -->