808cdc046593cff1a4b4d2db2762a4ef4b996dca
chmalee
  Tue Apr 21 12:49:51 2020 -0700
Changing track descriptions and labels of clinvar and lovd tracks to reflect changes to length cutoff for the cnv and short variants

diff --git src/hg/makeDb/trackDb/human/clinvar.html src/hg/makeDb/trackDb/human/clinvar.html
index 7780c78..96e6dd5 100644
--- src/hg/makeDb/trackDb/human/clinvar.html
+++ src/hg/makeDb/trackDb/human/clinvar.html
@@ -24,37 +24,37 @@
 Variants may be right-aligned or may contain additional context, e.g. for
 inserts. ExAC/gnomAD make available <a href="https://github.com/macarthur-lab/clinvar"
 target="_blank">a converter</a>
 to make ClinVar more comparable to VCF files.</p>
 
 <h2>Display Conventions and Configuration</h2>
 
 <p>
 Genomic locations of ClinVar variants are labeled with the ClinVar variant
 descriptions. All information related to each is variant is shown on that
 variant's details page.  Leave the mouse over a feature for more than 2 seconds
 to show the clinical significance of a variant.
 </p>
 
 <p>The track is divided into two subtracks, one for copy number variants (CNVs), which are all 
-variants longer than 100bp, and a second track for shorter substitutions and indels.</p>
+variants longer than 50bp, and a second track for shorter substitutions and indels.</p>
 
 <p>
 Until October 2017, all variants with the ClinVar types copy number gain/loss
 and DbVar "nsv" accessions were put in the CNV category.  Due
 to the ClinVar type not capturing this information anymore, anything longer
-than 100bp is now considered a CNV.</p>
+than 50bp is now considered a CNV.</p>
 
 <p>
 Entries in the ClinVar CNV track are colored
 <b><font color="red">red for loss</font></b> and
 <B><font color="blue">blue for gain</font></b>.
 </p>
 
 <p>
 Entries in the ClinVar short variants track are shaded by clinical annotation:
 <b><font color="red">red for pathogenic</font></b>,
 <B><font color="#888">dark grey for uncertain significance or not provided</font></b> and
 <B><font color="#000088">dark blue for variant of uncertain significance</font></b> and
 <B><font color="#ADD8E6">light blue for conflicting</font></b> and
 <B><font color="green">green for benign</font></b>.
 </p>