8fa777e7a626753ecf40a7471999dba3a984e272 max Tue Apr 21 09:21:39 2020 -0700 more clinvar improvements, refs #24850 diff --git src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra index 8297bff..f7d2525 100644 --- src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra +++ src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra @@ -1,25 +1,26 @@ track clinvar compositeTrack on shortLabel ClinVar Variants longLabel ClinVar Variants group phenDis visibility hide type bed 12 + itemRgb on urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/" -scoreLabel ClinVar Star-Rating (0-4) +#scoreLabel ClinVar Star-Rating (0-4) +noScoreFilter on track clinvarMain shortLabel ClinVar Short Variants longLabel ClinVar Short Variants <= 100bp visibility pack parent clinvar priority 1 type bigBed 12 + filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other filterType._clinSignCode singleList filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown filterType._originCode singleList filterValues._allTypeCode SNV|single nucleotide variant,INS|insertion,DEL|deletion,INDEL|insertion-deletion,dupl|duplication,OTH|other filterType._allTypeCode singleList filterByRange._valLen on