3b4ec517d97a4a4bd01864d969041635423e13e6 chmalee Fri May 1 15:53:55 2020 -0700 Adding wuhCor1 to genbank build diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf index bc9edd9..952376e 100644 --- src/hg/makeDb/genbank/etc/genbank.conf +++ src/hg/makeDb/genbank/etc/genbank.conf @@ -4875,19 +4875,31 @@ hpv1.lift = no hpv1.downloadDir = hpv1 hpv1.perChromTables = no hpv1.refseq.mrna.native.pslCDnaFilter = ${finished.refseq.mrna.native.pslCDnaFilter} hpv1.refseq.mrna.xeno.pslCDnaFilter = ${finished.refseq.mrna.xeno.pslCDnaFilter} hpv1.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter} hpv1.genbank.mrna.xeno.pslCDnaFilter = ${finished.genbank.mrna.xeno.pslCDnaFilter} hpv1.genbank.est.native.pslCDnaFilter = ${finished.genbank.est.native.pslCDnaFilter} # DO NOT NEED genbank.mrna.xeno except for human, mouse # defaults yes: genbank.mrna.native.load, genbank.mrna.native.loadDesc, # genbank.est.native.load, refseq.mrna.native.load, refseq.mrna.native.loadDesc, # refseq.mrna.xeno.load , refseq.mrna.xeno.loadDesc # hpv1.upstreamGeneTbl = ensGene # hpv1.upstreamMaf = multiz9way /hive/data/genomes/hpv1/bed/multiz9way/species.list +# wuhCor1 (Severse acute respiratory syndrome coronavirus 2 - Taxid: 2697049) +wuhCor1.serverGenome = /hive/data/genomes/wuhCor1/wuhCor1.2bit +wuhCor1.ooc = /hive/data/genomes/wuhCor1/jkStuff/wuhCor1.11.ooc +wuhCor1.lift = no +wuhCor1.downloadDir = wuhCor1 +wuhCor1.perChromTables = no +wuhCor1.refseq.mrna.native.pslCDnaFilter = ${finished.refseq.mrna.native.pslCDnaFilter} +wuhCor1.refseq.mrna.xeno.pslCDnaFilter = ${finished.refseq.mrna.xeno.pslCDnaFilter} +wuhCor1.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter} +wuhCor1.genbank.mrna.xeno.pslCDnaFilter = ${finished.genbank.mrna.xeno.pslCDnaFilter} +wuhCor1.genbank.est.native.pslCDnaFilter = ${finished.genbank.est.native.pslCDnaFilter} + # # Please keep organisms together and in assending order rather than adding at # the end #