67d50873eca0ae6f595367077c9735b7d348e5c2 hiram Fri May 1 12:31:59 2020 -0700 adding functions to build VGP index pages refs #23734 diff --git src/hg/makeDb/doc/asmHubs/vgp.asmId.commonName.tsv src/hg/makeDb/doc/asmHubs/vgp.asmId.commonName.tsv new file mode 100644 index 0000000..c36718c --- /dev/null +++ src/hg/makeDb/doc/asmHubs/vgp.asmId.commonName.tsv @@ -0,0 +1,157 @@ +GCA_003369685.2_UOA_Angus_1 hybrid cattle +GCA_003957525.1_bTaeGut1_v1.h zebra finch +GCA_003957575.1_bCalAnn1_v1.h Anna's hummingbird +GCA_004011185.1_bStrHab1_v1.h Kakapo +GCA_004115175.2_mOrnAna1.alt.v3 platypus +GCA_004115215.3_mOrnAna1.pri.v3 platypus +GCA_004115245.1_mPhyDis1_v1.h pale spear-nosed bat +GCA_004115295.1_mRhiFer1_v1.h greater horseshoe bat +GCA_007364235.1_fArcCen1_v1.h flier cichlid +GCA_007399395.1_rGopEvg1_v1.alt Goodes thornscrub tortoise +GCA_007474575.1_mLynCan4_v1.alt Canada lynx +GCA_008658355.1_bAlcTor1_alternate razorbill +GCA_008658365.1_bAlcTor1_primary razorbill +GCA_008658375.1_mBalMus1_alternate Blue whale +GCA_008692045.1_mPhoSin1.alt vaquita +GCA_008822115.3_bTaeGut2.mat.v3 zebra finch +GCA_008822125.1_bTaeGut2pat zebra finch +GCA_009651025.1_bCorMon1.alt New Caledonian crow +GCA_009762295.1_mZalCal1.alt California sea lion +GCA_009762305.1_mZalCal1.pri California sea lion +GCA_009762535.1_fNotCel1.pri New Zealand spotty +GCA_009762545.1_fNotCel1.alt New Zealand spotty +GCA_009762595.1_rDerCor1.alt leatherback sea turtle +GCA_009764475.1_sPriPec2.pri smalltooth sawfish +GCA_009764485.1_sPriPec2.alt smalltooth sawfish +GCA_009764505.1_bTauEry1.alt red-crested turaco +GCA_009764545.1_bGeoTri1.alt common yellowthroat +GCA_009764565.1_rDerCor1.pri leatherback sea turtle +GCA_009764595.1_bGeoTri1.pri common yellowthroat +GCA_009769465.1_bTauEry1.pri red-crested turaco +GCA_009769485.1_bCygOlo1.alt mute swan +GCA_009769505.1_bPteGut1.alt yellow-throated sandgrouse +GCA_009769515.1_fCycLum1.alt lumpfish +GCA_009769525.1_bPteGut1.pri yellow-throated sandgrouse +GCA_009769545.1_fCycLum1.pri lumpfish +GCA_009769595.1_bBucAby1.alt Abyssinian ground-hornbill +GCA_009769605.1_bBucAby1.pri Abyssinian ground-hornbill +GCA_009769625.1_bCygOlo1.pri mute swan +GCA_009769695.1_rThaEle1.alt Western terrestrial garter snake +GCA_009819485.1_bCarCri1.alt Red-legged seriema +GCA_009819505.1_bCatUst1.alt Swainson's thrush +GCA_009819545.1_rLacAgi1.alt sand lizard +GCA_009819585.1_bMerNub1.alt carmine bee-eater +GCA_009819595.1_bMerNub1.pri carmine bee-eater +GCA_009819605.1_bSteHir1.pri Common tern +GCA_009819645.1_bSteHir1.alt Common tern +GCA_009819655.1_bSylAtr1.pri blackcap +GCA_009819705.1_fHipHip1.pri Atlantic halibut +GCA_009819715.1_bSylAtr1.alt blackcap +GCA_009819745.1_fHipHip1.alt Atlantic halibut +GCA_009819775.1_bPhoRub2.pri American flamingo +GCA_009819805.1_bPhoRub2.alt American flamingo +GCA_009819825.1_bCarCri1.pri Red-legged seriema +GCA_009819845.1_bAytFul2.alt tufted duck +GCA_009829125.1_fPerMag1.pri bony fishes +GCA_009829135.1_fPerMag1.alt bony fishes +GCA_009829165.1_mMusErm1.alt ermine +GCA_009829205.1_bChiLan1.alt lance-tailed manakin +GCA_009859025.1_bTaeGut2.p.v1.alt zebra finch +GCA_009859065.2_bTaeGut2.pri.v2 zebra finch +GCA_009873245.2_mBalMus1.v2 Blue whale +GCA_010909745.1_sAmbRad1.alt thorny skate +GCA_010993595.1_kPetMar1.alt sea lamprey +GCA_011004835.1_fEsoLuc1.alt northern pike +GCA_011004845.1_fEsoLuc1.pri northern pike +GCA_011004865.1_bBalReg1.alt East African grey crowned-crane +GCA_011004875.1_bBalReg1.pri East African grey crowned-crane +GCA_011078405.1_mCalJac1.mat white-tufted-ear marmoset +GCA_011100535.1_mCalJac1.pat white-tufted-ear marmoset +GCA_011100555.1_mCalJac1.pat.X white-tufted-ear marmoset +GCA_011100635.1_mTriVul1.pri common brushtail +GCA_011100645.1_mTriVul1.alt common brushtail +GCA_011750645.1_mArvNil1.mat African grass rat +GCA_011762505.1_mArvNil1.pat.X African grass rat +GCA_011762515.1_mTurTru1.pat common bottlenose dolphin +GCA_011762535.1_mTurTru1.mat common bottlenose dolphin +GCA_011762545.1_mArvNil1.pat African grass rat +GCA_011762595.1_mTurTru1.mat.Y common bottlenose dolphin +GCA_012275265.1_bMelUnd1.mat budgerigar +GCA_012275275.1_bMelUnd1.pat budgerigar +GCA_012275295.1_bMelUnd1.mat.Z budgerigar +GCA_900634435.1_fCotGob3.1_alternate_haplotype bony fishes +GCA_900650485.1_fAnaTes1.2_alternate_haplotype climbing perch +GCA_900650505.1_fGouWil2.1_alternate_haplotype blunt-snouted clingfish +GCA_900651595.1_fParRan2.1_alternate_haplotype Indian glassy fish +GCA_900651605.1_fBetSpl5.1_alternate_haplotype Siamese fighting fish +GCA_900700345.2_fDenClu1.1_alternate_haplotype denticle herring +GCA_900700395.1_fMasArm1.2_alternate_haplotype zig-zag eel +GCA_900700845.2_fErpCal1.1_alternate_haplotype reedfish +GCA_900880695.1_fSpaAur1.1_alternate_haplotype gilthead seabream +GCA_900963505.1_fEcheNa1.1_alternate_haplotype live sharksucker +GCA_900964985.2_fSclFor1.1_alternate_haplotype Asian bonytongue +GCA_901000745.3_fTakRub1.2_alternate_haplotype torafugu +GCA_901001175.1_aRhiBiv1.1_alternate_haplotype two-lined caecilian +GCA_901699155.1_bStrTur1.1 birds +GCA_901699165.1_bStrTur1.1_alternate_haplotype birds +GCA_901709675.1_fSynAcu1.1 greater pipefish +GCA_901709685.1_fSynAcu1.1_alternate_haplotype greater pipefish +GCA_901765105.1_aMicUni1.1_alternate_haplotype caecilians +GCA_902148815.1_fMyrMur1.1_alternate_haplotype pinecone soldierfish +GCA_902148825.1_fSphaOr1.1_alternate_haplotype orbiculate cardinalfish +GCA_902148835.1_fSalaFa1.1_alternate_haplotype jewelled blenny +GCA_902153765.1_bAquChr1.2_alternate_haplotype golden eagle +GCA_902167395.1_gadMor3.0_alternate_haplotype Atlantic cod +GCA_902362175.1_fChaCha1.1_alternate_haplotype milkfish +GCA_902459445.1_eAstRub1.2_alternate_haplotype European starfish +GCA_902459495.1_aGeoSer1.1_alternate_haplotype caecilians +GCA_902459505.1_aGeoSer1.1 caecilians +GCA_902500245.1_fThaAma1.1_alternate_haplotype bony fishes +GCA_902500255.1_fThaAma1.1 bony fishes +GCA_902685485.1_mSciVul1.1_alternate_haplotype Eurasian red squirrel +GCA_902686455.1_mSciVul1.1 Eurasian red squirrel +GCA_902713425.1_fAciRut3.1_maternal_haplotype sterlet +GCA_902713435.1_fAciRut3.1_paternal_haplotype sterlet +GCF_003369695.1_UOA_Brahman_1 hybrid cattle +GCF_003957555.1_bCalAnn1_v1.p Anna's hummingbird +GCF_003957565.1_bTaeGut1_v1.p zebra finch +GCF_004027225.2_bStrHab1.2.pri Kakapo +GCF_004115265.1_mRhiFer1_v1.p greater horseshoe bat +GCF_004126475.1_mPhyDis1_v1.p pale spear-nosed bat +GCF_007364275.1_fArcCen1 flier cichlid +GCF_007399415.2_rGopEvg1_v1.p Goodes thornscrub tortoise +GCF_007474595.1_mLynCan4_v1.p Canada lynx +GCF_008692025.1_mPhoSin1.pri vaquita +GCF_008822105.2_bTaeGut2.pat.W.v2 zebra finch +GCF_009650955.1_bCorMon1.pri New Caledonian crow +GCF_009769535.1_rThaEle1.pri Western terrestrial garter snake +GCF_009819535.1_rLacAgi1.pri sand lizard +GCF_009819795.1_bAytFul2.pri tufted duck +GCF_009819885.1_bCatUst1.pri Swainson's thrush +GCF_009829145.1_bChiLan1.pri lance-tailed manakin +GCF_009829155.1_mMusErm1.Pri ermine +GCF_010909765.1_sAmbRad1.pri thorny skate +GCF_010993605.1_kPetMar1.pri sea lamprey +GCF_900246225.1_fAstCal1.2 eastern happy +GCF_900324465.2_fAnaTes1.2 climbing perch +GCF_900324485.2_fMasArm1.2 zig-zag eel +GCF_900496995.1_bAquChr1.2 golden eagle +GCF_900634415.1_fCotGob3.1 bony fishes +GCF_900634625.1_fParRan2.1 Indian glassy fish +GCF_900634775.1_fGouWil2.1 blunt-snouted clingfish +GCF_900634795.2_fBetSpl5.2 Siamese fighting fish +GCF_900700375.1_fDenClu1.1 denticle herring +GCF_900747795.1_fErpCal1.1 reedfish +GCF_900880675.1_fSpaAur1.1 gilthead seabream +GCF_900963305.1_fEcheNa1.1 live sharksucker +GCF_900964775.1_fSclFor1.1 Asian bonytongue +GCF_901000725.2_fTakRub1.2 torafugu +GCF_901001135.1_aRhiBiv1.1 two-lined caecilian +GCF_901001165.1_fSalTru1.1 river trout +GCF_901765095.1_aMicUni1.1 caecilians +GCF_902148845.1_fSalaFa1.1 jewelled blenny +GCF_902148855.1_fSphaOr1.1 orbiculate cardinalfish +GCF_902150065.1_fMyrMur1.1 pinecone soldierfish +GCF_902167405.1_gadMor3.0 Atlantic cod +GCF_902362185.1_fChaCha1.1 milkfish +GCF_902459465.1_eAstRub1.3 European starfish