67d50873eca0ae6f595367077c9735b7d348e5c2
hiram
  Fri May 1 12:31:59 2020 -0700
adding functions to build VGP index pages refs #23734

diff --git src/hg/makeDb/doc/asmHubs/asmHubs.mk src/hg/makeDb/doc/asmHubs/asmHubs.mk
index 97de1d5..d1f6fc1 100644
--- src/hg/makeDb/doc/asmHubs/asmHubs.mk
+++ src/hg/makeDb/doc/asmHubs/asmHubs.mk
@@ -1,57 +1,59 @@
 # generic makefile to construct the index pages and symlinks
 # for any of the assembly hubs:
 # primates, mammals, birds, fish, vertebrate
 #
 # will be included by those individual build directories with the
 # Name and name defined to use here
 
 destDir=/hive/data/genomes/asmHubs/${name}
 srcDir=${HOME}/kent/src/hg/makeDb/doc/${name}AsmHub
 toolsDir=${HOME}/kent/src/hg/makeDb/doc/asmHubs
 
-all:: makeDirs symLinks ${destDir}/hub.txt ${destDir}/groups.txt \
-	mkGenomes ${destDir}/index.html \
-	${destDir}/asmStats.html
+all:: makeDirs mkGenomes symLinks ${destDir}/hub.txt ${destDir}/groups.txt \
+	hubIndex asmStats trackData
 
 makeDirs:
 	mkdir -p ${destDir}
 
 symLinks::
 	${toolsDir}/mkSymLinks.pl ${Name} ${name}
 
 hubIndex::
 	${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} > ${destDir}/index.html
-	sed -e "s/hgdownload.soe/hgdownload-test.gi/g; s#/index.html#/testIndex.html#; s#${name}/hub.txt#${name}/testHub.txt#; s/asmStats/testAsmStats/;" ${destDir}/index.html > ${destDir}/testIndex.html
+	sed -e "s#genome.ucsc.edu/h/#genome-test.gi.ucsc.edu/h/#g; s/hgdownload.soe/hgdownload-test.gi/g; s#/index.html#/testIndex.html#; s#${name}/hub.txt#${name}/testHub.txt#; s/asmStats/testAsmStats/; s#trackData.html#testTrackData.html#;" ${destDir}/index.html > ${destDir}/testIndex.html
 	chmod +x ${destDir}/index.html ${destDir}/testIndex.html
 
 asmStats::
 	rm -f ${destDir}/asmStats${Name}.html ${destDir}/testAsmStats${Name}.html
 	${toolsDir}/mkAsmStats.pl ${Name} ${name} > ${destDir}/asmStats.html
-	sed -e "s/hgdownload.soe/hgdownload-test.gi/g; s/index.html/testIndex.html/; s#/asmStats#/testAsmStats#;" ${destDir}/asmStats.html > ${destDir}/testAsmStats.html
+	sed -e "s/hgdownload.soe/hgdownload-test.gi/g; s/index.html/testIndex.html/; s#/asmStats#/testAsmStats#; s#trackData.html#testTrackData.html#;" ${destDir}/asmStats.html > ${destDir}/testAsmStats.html
 	chmod +x ${destDir}/asmStats.html ${destDir}/testAsmStats.html
 
+# trackData makes different tables for the test vs. production version
 trackData::
 	${toolsDir}/trackData.pl ${Name} ${name} > ${destDir}/trackData.html
+	${toolsDir}/trackData.pl -test ${Name} ${name} > ${destDir}/testTrackData.html
 	chmod +x ${destDir}/trackData.html
+	chmod +x ${destDir}/testTrackData.html
 
 mkGenomes::
 	${toolsDir}/mkGenomes.pl ${Name} ${name} > ${destDir}/genomes.txt
 
 ${destDir}/hub.txt: ${srcDir}/hub.txt
 	rm -f ${destDir}/hub.txt
 	cp -p ${srcDir}/hub.txt ${destDir}/hub.txt
 	sed -e 's/index.html/testIndex.html/;' ${srcDir}/hub.txt > ${destDir}/testHub.txt
 
 ${destDir}/groups.txt: ${toolsDir}/groups.txt
 	rm -f ${destDir}/groups.txt
 	cp -p ${toolsDir}/groups.txt ${destDir}/groups.txt
 
 clean::
 	rm -f ${destDir}/hub.txt
 	rm -f ${destDir}/testHub.txt
 	rm -f ${destDir}/groups.txt
 	rm -f ${destDir}/genomes.txt
 	rm -f ${destDir}/index.html
 	rm -f ${destDir}/testIndex.html
 	rm -f ${destDir}/asmStats.html
 	rm -f ${destDir}/testAsmStats.html