4da7f36cc07a5babf2a5dfb898f66f58199f1502 kate Mon May 4 09:12:51 2020 -0700 Add two more links (NYT) by request of DH. refs #25217 diff --git src/hg/htdocs/covid19.html src/hg/htdocs/covid19.html index 3d029c8..dffbfe7 100755 --- src/hg/htdocs/covid19.html +++ src/hg/htdocs/covid19.html @@ -1,155 +1,163 @@ <!DOCTYPE html> <!--#set var="TITLE" value="COVID-19 Resources at UCSC" --> <!--#set var="ROOT" value="." --> <!--#include virtual="$ROOT/inc/gbPageStart.html"--> <h1>COVID-19 Pandemic Resources at UCSC <span bgcolor=#f3e0be><font color=#555 size=-1 style="background-color: #f3e0be; padding-left: 10px; padding-right: 10px; margin-left: 15px;"> Updated: April 30, 2020</font></span></h1> <div class="row"> <div class="col-md-6"> <p> The SARS-CoV-2 coronavirus emerged in December 2019 as a novel human pathogen causing a severe acute respiratory syndrome (COVID-19). In the following months, the disease spread internationally and was <A TARGET="_BLANK" HREF="https://www.who.int/dg/speeches/detail/who-director-general-s-opening-remarks-at-the-media-briefing-on-covid-19---11-march-2020"> declared a pandemic by the World Health Organization</a> on March 11, 2020. </p> <p> We at the <a target="_blank" href="https://ucscgenomics.soe.ucsc.edu/">UC Santa Cruz Genomics Institute</a> are responding to the urgency of supporting biomedical research aimed at developing therapeutics and a vaccine for this devastating illness by fast-tracking the <a target="_blank" href="../cgi-bin/hgGateway?db=wuhCor1">UCSC Genome Browser for SARS-Cov-2</a> and incorporating relevant biomedical datasets such as single-cell lung gene expression into the <a target="_blank" href="../singlecell.html">UCSC Cell Browser</a>. </p> <p> The <a target="_blank" href="https://genome.ucsc.edu"> UCSC Genome Browser</a> is a publicly available web resource serving the research community since July 2000. Both the Genome Browser and UCSC Cell Browser are funded by the <a target="_blank" href="https://www.genome.gov/">NIH National Human Genome Research Institute</a>. In addition to this funding, the COVID-19 projects here are funded by generous individuals, including local donors Pat and Roland Rebele. To contribute, click <a target="_blank" href="https://secure.ucsc.edu/s/1069/bp18/interior.aspx?sid=1069&gid=1001&pgid=780&cid=1749&dids=645"> here</a>. </p> </div> <div class="col-md-6"> <img class="text-center" alt="COVID-19 transmission as of April 28, 2020, from Nextstrain" src="../images/covid19-transmission.apr28_2020.nextstrain.png" style="margin-bottom: 5px !important"> <div style="text-align: right; line-height: 1"> <font SIZE=-1><em>COVID-19 transmission as of April 28, 2020</em><BR> </font> <font SIZE=-2> <A HREF="https://nextstrain.org" TARGET=_blank>Latest situation report from Nextstrain.org</a> </font> </div> </div> </div> <style> img { width: 100%; margin: 15px 0 !important; } </style> <div class="row"> <!-- Genome browser --> <div class="col-md-6"> <h2>UCSC Genome Browser view of SARS-CoV-2 genomic datasets</h2> <a href="../cgi-bin/hgTracks?db=wuhCor1" target="_blank"> <img src="../images/sarsCov2SpikeProteinsSession.png"></a> </div> <!-- Cell browser --> <div class="col-md-6"> <h2>UCSC Cell Browser view of lung gene expression datasets</h2> <a href="https://cells.ucsc.edu/?bp=lung" target="_blank"> <img src="../images/cellBrowserAce2EilsLung.png"></a> </div> </div> <h2>Related publications and data resources</h2> <ul> -<li> -<i>Nature</i> News grahical guide to vaccine designs: -<a target="_blank" href="https://www.nature.com/articles/d41586-020-01221-y"> -The Race for Coronavirus Vaccines</a> -</li> <li> Preprints of research manuscripts: <a href="https://connect.biorxiv.org/relate/content/181" target="_blank">BioRxiv/MedRxiv COVID-19 Collection</a> (all freely available)</li> <li><a target="_blank" href="https://pages.semanticscholar.org/coronavirus-research">COVID-19 Open Research Dataset</a> of scholarly literature</li> <li> NIH Office of Data Science Strategy <a target="_blank" href="https://datascience.nih.gov/covid-19-open-access-resources">Open-Access Data and Computational Resources to Address COVID-19</a> </li> <li> European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL-EBI) and partners: <a target="_blank" href="https://www.covid19dataportal.org/"> COVID-19 Data Portal</a> </li> <li> China National Center for Bioinformation: <a target="_blank" href="https://bigd.big.ac.cn/ncov?lang=en"> 2019 Novel Coronavirus Resource</a> </li> <li> CDC <a target="_blank" href="https://github.com/CDCgov/SARS-CoV-2_Sequencing"> SARS-CoV-2 Sequencing Resources</a> on GitHub </li> <li> Nextstrain open-source tracking of pathogen evolution: <a target="_blank" href="https://nextstrain.org/ncov">SARS-Cov2 browser</a> (strain tree, geographical mapping)</li> <li> NCBI sequence database search, publication list, and genome display: <a href="https://www.ncbi.nlm.nih.gov/genbank/sars-cov-2-seqs/" target="_blank"</a>NCBI SARS-CoV-2 Sequences</a></li> <li>Virus Pathogen Resource: <a target="_blank" href="https://www.viprbrc.org/brc/home.spg?decorator=corona_ncov">VIPR SARS-CoV-2 resource</a> (tools for sequence and structure analysis, comparative genomics and phenotype studies)</li> <li>CDC: <a target="_blank" href="https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/cases-in-us.html">Cases in U.S.</a>, updated daily. CDC data as <em>per capita</em> <a href = "https://bit.ly/coronaPerCapita" target = _blank>map</a> of the states. </li> <li>Johns Hopkins University: <a target="_blank" href="https://coronavirus.jhu.edu/map.html"> Coronavirus Resource Center</a></li> <li> CitizenScience.org: <a target="_blank" href="https://www.citizenscience.org/covid-19/" > COVID-19 citizen science and crowdsourcing projects</a> </li> <li>Wikipedia: <a target="_blank" href="https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2">Severe acute respiratory syndrome coronavirus 2</a></li> +<li> +Nature News graphical guide to vaccine designs: +<a target="_blank" href="https://www.nature.com/articles/d41586-020-01221-y"> +The Race for Coronavirus Vaccines</a> +</li> + +<li> +<a target="_blank" href="https://www.nytimes.com/interactive/2020/04/03/science/coronavirus-genome-bad-news-wrapped-in-protein.html"> +Inside the Coronavirus Genome</a>, and +<a target="_blank" href="https://www.nytimes.com/interactive/2020/04/30/science/coronavirus-mutations.html"> +How Coronavirus Mutates and Spreads</a>, The New York Times +</li> + </ul> <!--#include virtual="$ROOT/inc/gbPageEnd.html"-->