7aef71a104ec1c3bb84dcff245b03dfc58d53358 lrnassar Wed Apr 29 15:10:14 2020 -0700 Fixing some forgot db declarations, no RM diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 55f0194..8507b5e 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -500,36 +500,36 @@ UniProt full-length proteins</a> - The protein sequences from SwissProt mapped onto the genome, genomic coordinates for other UniProt feature tracks are based on this data.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=unipCov2Interest"> UniProt highlighted 'Regions of Interest'</a> - This track shows protein sequence annotations defined as "regions of interest" from the UniProt/SwissProt database, this data has been curated from scientific publications by the UniProt/SwissProt staff.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=unipCov2Chain"> UniProt Mature, Processed Protein Products (Polypeptide Chains)</a> - Polypeptide chain in mature protein after post-processing.</li> <li> For a full list of available UniProt tracks, see <b>UniProt Protein Annotations</b> in the <a target="_blank" href="/cgi-bin/hgTracks?db=wuhCor1">SARS-CoV-2 browser</a>.</li></ul></li> <li> -<a target="_blank" href="/cgi-bin/hgTrackUi?wuhCor1&c=NC_045512v2&g=epitopes"> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=epitopes"> Immune Epitope Database and Analysis Resource (IEDB) Epitopes</a> - This track indicates the immune epitope predictions for B cells, CD4 T-cells and CD8 T-cells, using varying software packages.</li> <li> -<a target="_blank" href="/cgi-bin/hgTrackUi?wuhCor1&c=NC_045512v2&g=primers"> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=primers"> RT-PCR Primers</a> - This track shows RT-PCR Primers in viral detection kits aligned to the SARS-CoV-2 genome from six different sources, including government agencies from the US, China, Japan, and Thailand.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=nextstrainSamples"> Nextstrain Variants</a> - This track displays all single-nucleotide variants in the thousands of SARS-CoV-2 genome sequences from GISAID collected and processed by Nextstrain.org. This track can be used to examine variation, protein changes, and sequence conservation among SARS-CoV-2 sequences.</li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=nextstrainClade"> Nextstrain Clades</a> - This track shows the location of variants that distinguish each of the branches of interest defined by Nextstrain.org and can be used in conjunction with their tree and map diagrams to examine viral lineage.</li> <li>