8449958c66006a38a4515b46ad1e78d7f7f6ad81 markd Wed Apr 29 14:53:20 2020 -0700 import of GENCODE 34lift37 diff --git src/hg/makeDb/doc/hg19.gencode.txt src/hg/makeDb/doc/hg19.gencode.txt index e2c7aaa..6d4e14c 100644 --- src/hg/makeDb/doc/hg19.gencode.txt +++ src/hg/makeDb/doc/hg19.gencode.txt @@ -656,26 +656,32 @@ # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/hg19/bed/gencodeV34lift37Pre pushd /hive/data/genomes/hg19/bed/gencodeV34lift37Pre (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg19 34lift37 100 'March 2020' # Update human/hg19/wgEncodeGencodeSuper.html and update 'Release Notes' - # to describe new release. [ONLY if it's going to be pushed] + # to describe new release. # edit human/hg19/trackDb.gencode.ra to add new .ra file include make DBS=hg19 # edit all.joiner to add ~/tmp/gencodeV34lift37.joiner # verify with: pushd /hive/data/genomes/hg19/bed/gencodeV34lift37Pre make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # commit all +### +2020-03-11: final release (markd) + mkdir -p /hive/data/genomes/hg19/bed/gencodeV34lift37 + repeat above, only making release month April + ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg19 34lift37 100 'April 2020' +