7bd8c4f2fd1c56e7bb81ac0235944ab82cfabaea markd Wed Apr 29 13:46:43 2020 -0700 import of GENCODE VM25 diff --git src/hg/makeDb/doc/mm10.gencode.txt src/hg/makeDb/doc/mm10.gencode.txt index 3bef3d8..d391de2 100644 --- src/hg/makeDb/doc/mm10.gencode.txt +++ src/hg/makeDb/doc/mm10.gencode.txt @@ -923,32 +923,38 @@ # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/mm10/bed/gencodeVM25Pre pushd /hive/data/genomes/mm10/bed/gencodeVM25Pre (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb ../../makeDb/outside/gencode/gencodeGenerateTrackDbs mm10 M25 100 'March 2020' - # If being pushed public, update 'Release Notes' if pushing puyblic. + # Update 'Release Notes' # mouse/mm10/wgEncodeGencodeSuper.html # edit mouse/mm10/trackDb.gencode.ra to add new .ra file include make DBS=mm10 ## only if being pushed to RR: # edit all.joiner to add ~/tmp/gencodeVM25.joiner # verify with: pushd /hive/data/genomes/mm10/bed/gencodeVM25Pre make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # check tracks in browser sandbox # commit all make DBS=mm10 alpha # if pushing public: add ticket and MARK QA READY +### +2020-03-11: final release (markd) + mkdir -p /hive/data/genomes/mm10/bed/gencodeVM25 + repeat above, only making release month April + ../../makeDb/outside/gencode/gencodeGenerateTrackDbs mm10 M25 100 'April 2020' +