8449958c66006a38a4515b46ad1e78d7f7f6ad81 markd Wed Apr 29 14:53:20 2020 -0700 import of GENCODE 34lift37 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 241d690..e3fc820 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -24,32 +24,32 @@ export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## #db = hg38 -#db = hg19 -db = mm10 +db = hg19 +#db = mm10 preRelease = no #preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M25 prevVer = M24 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 100_38 ensemblPrevVer = 99_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 34