dbcc7835da6ae05a32f309ba3f9ec6c52b966e55 max Sat May 2 08:27:10 2020 -0700 fixing duplicate table name, nightly auto email. diff --git src/hg/lib/genbankBigGenePred.as src/hg/lib/genbankBigGenePred.as index 7c16ec4..4beffb7 100644 --- src/hg/lib/genbankBigGenePred.as +++ src/hg/lib/genbankBigGenePred.as @@ -1,31 +1,31 @@ -table bigGenePred -"bigGenePred gene models" +table genbankBigGenePred +"bigGenePred gene models parsed from Genbank files" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name or ID of item, ideally both human readable and unique" uint score; "Score (0-1000)" char[1] strand; "+ or - for strand" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "RGB value (use R,G,B string in input file)" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" string name2; "Alternative/human readable name" string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" string type; "Transcript type" string geneName; "Primary identifier for gene" string geneName2; "Alternative/human readable gene name" string geneType; "Gene type" string note; "Notes" string product; "Protein Product" string geneId; "NCBI Gene ID" lstring _cdnaSeq; "cDNA Sequence" lstring _cdnaPsl; "cDNA to genome PSL alignment (or empty)" lstring _protSeq; "Protein Sequence" lstring _protPsl; "protein to cDNA PSL alignment (or empty)" )