d93f47cd567bb70aba94de233054e8b4fae00f7d
braney
  Fri May 29 15:33:58 2020 -0700
remove frameshifts from psls in hgVai

diff --git src/inc/psl.h src/inc/psl.h
index 20da71e..56874d9 100644
--- src/inc/psl.h
+++ src/inc/psl.h
@@ -351,17 +351,20 @@
 }
 
 INLINE unsigned pslTEnd(struct psl *psl, int blkIdx)
 /* return target end for the given block */
 {
 return psl->tStarts[blkIdx] + psl->blockSizes[blkIdx];
 }
 
 struct psl* pslClone(struct psl *psl);
 /* clone a psl */
 
 extern char *pslSortList[5];
 
 void pslSortListByVar(struct psl **pslList, char *sort);
 /* Sort a list of psls using the method definied in the sort string. */
+
+void pslRemoveFrameShifts(struct psl *psl);
+/* Remove any frameshits if present. Changes in place, doesn't update statistics in first nine fields. */
 #endif /* PSL_H */