ca12c087c64d30c9ccd2212bade60c7bb8475df5 dschmelt Tue May 26 15:58:15 2020 -0700 Minor changes CR #25624 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 586de9b..46d4d11 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -199,33 +199,34 @@ href="https://www.gencodegenes.org/">GENCODE site</a>. This includes <a target="_blank" href="https://www.gencodegenes.org/human/stats.html">statistics on each release</a>. <p>We would like to thank the <a target="_blank" href="https://www.gencodegenes.org/pages/gencode.html">GENCODE project</a> for providing these annotations. We would also like to thank Mark Diekhans and Daniel Schmelter for the development and release of these tracks.</p> <h3>GTEx V8 gene transcript expression from RNA-seq of 54 tissues</h3> <a name="052220a"></a> <p>We are excited to announce an update to the GTEx V8 for the gene expression track based on data from the <a target="_blank" href="http://commonfund.nih.gov/GTEx/index"> NIH Genotype-Tissue Expression (GTEx) project</a>. This track displays tissue-specific gene expression based on RNA-seq in 54 tissues from 948 donors released in August 2019. -The original data for this track can be found at <a target="_blank" - href="https://www.gtexportal.org/">the GTEX Portal</a> hosted by the Broad Institute. +The original data for this track can be found at the <a target="_blank" + href="https://www.gtexportal.org/">GTEx Portal</a> hosted by the Broad Institute.</p> +<p> This track features a horizontal bar chart for each GENCODE gene, resulting in colored bars which show median tissue expression values assayed by the GTEx project in RPKM. Mouse over the bar in the graph shows a tissue specific expression value, while clicking on a chart shows a much larger box-and-whiskers graph for that transcript. The complete tissue color legend and filters are shown on the <a target="_blanK" a href="/cgi-bin/hgGtexTrackSettings?db=hg38&g=gtexGeneV8">GTEx track configuration page</a>. Below the bar graph, a line is shown indicating the gene extent that was used to generate the annotation, colored by gene class using GENCODE conventions (e.g. blue for protein-coding, green for non-coding). </p> <p> <a href = "/cgi-bin/hgGtexTrackSettings?db=hg38&g=gtexGeneV8" target = _blank> <img src = "../images/GTExV8.png" WIDTH = 750 HEIGHT = 432>