428bacd2dcbaca9304763d3f2dca7ccffd088caa hiram Tue May 26 11:18:06 2020 -0700 correct br tags refs #23734 diff --git src/hg/utils/automation/asmHubXenoRefGene.pl src/hg/utils/automation/asmHubXenoRefGene.pl index 5e7d650..076679b 100755 --- src/hg/utils/automation/asmHubXenoRefGene.pl +++ src/hg/utils/automation/asmHubXenoRefGene.pl @@ -60,34 +60,34 @@ my $organism = `grep -v "^#" $namesFile | cut -f5`; chomp $organism; print <<_EOF_ <h2>Description</h2> <p> The RefSeq mRNAs gene track for the $assemblyDate $em${organism}$noEm/$asmId genome assembly displays translated blat alignments of vertebrate and invertebrate mRNA in <a href="https://www.ncbi.nlm.nih.gov/genbank/" target="_blank"> GenBank</a>. </p> <h2>Track statistics summary</h2> <p> -<b>Total genome size: </b>$totalBases</br> +<b>Total genome size: </b>$totalBases<br> <b>Gene count: </b>$itemCount<br> -<b>Bases in genes: </b>$basesCovered</br> -<b>Percent genome coverage: </b>% $percentCoverage</br> +<b>Bases in genes: </b>$basesCovered<br> +<b>Percent genome coverage: </b>% $percentCoverage<br> </p> <h2>Search tips</h2> <p> Please note, the name searching system is not completely case insensitive. When in doubt, enter search names in all lower case to find gene names. </p> <h2>Methods</h2> <p> The mRNAs were aligned against the $em${organism}$noEm/$asmId genome using translated blat. When a single mRNA aligned in multiple places, the alignment having the highest base identity was found. Only those alignments having a base identity level within 1% of the best and at least 25% base identity with the