ded5fbfbae9e713b69de8aeef0efad8719034b07
hiram
  Wed May 27 17:34:00 2020 -0700
rework scripts to allow subset hubs to be created from a list of assemblies refs #23734

diff --git src/hg/makeDb/doc/vgpAsmHub/makefile src/hg/makeDb/doc/vgpAsmHub/makefile
index 59a5073..9724050 100644
--- src/hg/makeDb/doc/vgpAsmHub/makefile
+++ src/hg/makeDb/doc/vgpAsmHub/makefile
@@ -1,9 +1,31 @@
 
+destDir=/hive/data/genomes/asmHubs/vgp
+srcDir=${HOME}/kent/src/hg/makeDb/doc/vgpAsmHub
+orderList=vgp.primary.orderList.tsv
+
+indexName=index
+testIndexName=testIndex
+statsName=asmStats
+testStatsName=testAsmStats
+dataName=trackData
+testDataName=testTrackData
+genomesTxt=genomes
+hubFile=hub
+testHubFile=testHub
+
 Name=VGP
 name=vgp
 
-# turquoise killifish
-# defaultAssembly=GCF_001465895.1_Nfu_20140520
-defaultAssembly=GCF_001465895.1
+# GCA_009859065.2_bTaeGut2.pri.v2	zebra finch
+defaultAssembly=GCA_009859065.2
 
 include ../asmHubs/asmHubs.mk
+
+userData:
+	make -f userDataMakefile
+
+alt:
+	make -f altMakefile
+
+trio:
+	make -f trioMakefile