ded5fbfbae9e713b69de8aeef0efad8719034b07 hiram Wed May 27 17:34:00 2020 -0700 rework scripts to allow subset hubs to be created from a list of assemblies refs #23734 diff --git src/hg/makeDb/doc/vgpAsmHub/trioMakefile src/hg/makeDb/doc/vgpAsmHub/trioMakefile new file mode 100644 index 0000000..2ef0e89 --- /dev/null +++ src/hg/makeDb/doc/vgpAsmHub/trioMakefile @@ -0,0 +1,26 @@ + +## makefile definitions for a VGP subset of genomes with user supplied +## data tracks + +destDir=/hive/data/genomes/asmHubs/vgp +srcDir=${HOME}/kent/src/hg/makeDb/doc/vgpAsmHub +orderList=vgp.trio.orderList.tsv + +indexName=vgpTrio +testIndexName=testVgpTrio +statsName=vgpTrioStats +testStatsName=testVgpTrioStats +dataName=vgpTrioData +testDataName=testVgpTrioData +genomesTxt=trioGenomes +hubFile=trioHub +testHubFile=testTrioHub + +# these names trigger special behavior in the index page creation scripts: +Name=VGP +name=vgp + +# GCA_012275265.1_bMelUnd1.mat budgerigar +defaultAssembly=GCA_012275265.1 + +include ../asmHubs/asmHubs.mk