ded5fbfbae9e713b69de8aeef0efad8719034b07 hiram Wed May 27 17:34:00 2020 -0700 rework scripts to allow subset hubs to be created from a list of assemblies refs #23734 diff --git src/hg/makeDb/doc/vgpAsmHub/userDataMakefile src/hg/makeDb/doc/vgpAsmHub/userDataMakefile new file mode 100644 index 0000000..4a4d94a --- /dev/null +++ src/hg/makeDb/doc/vgpAsmHub/userDataMakefile @@ -0,0 +1,26 @@ + +## makefile definitions for a VGP subset of genomes with user supplied +## data tracks + +destDir=/hive/data/genomes/asmHubs/vgp +srcDir=${HOME}/kent/src/hg/makeDb/doc/vgpAsmHub +orderList=vgp.userTracks.tsv + +indexName=userTracks +testIndexName=testUserTracks +statsName=userStats +testStatsName=testUserStats +dataName=userData +testDataName=testUserData +genomesTxt=userGenomes +hubFile=userHub +testHubFile=testUserHub + +# these names trigger special behavior in the index page creation scripts: +Name=VGP +name=vgp + +# bCalAnn1_v1.p Anna's hummingbird +defaultAssembly=GCA_003957555.2 + +include ../asmHubs/asmHubs.mk