10cd6287a3c4534b8bd7fa6d9bf649b5bbfd316b kate Mon Jun 1 08:17:23 2020 -0700 Add news item for GENCODE COVID-19 gene annotation public hub. refs #25217 diff --git src/hg/htdocs/covid19.html src/hg/htdocs/covid19.html index ab33612..3ec3962 100755 --- src/hg/htdocs/covid19.html +++ src/hg/htdocs/covid19.html @@ -67,35 +67,52 @@ <a href="../cgi-bin/hgTracks?db=wuhCor1" target="_blank"> <img src="../images/sarsCov2SpikeProteinsSession.png"></a> <br> Video tutorial: Using the <a href = http://bit.ly/ucscVid20 target = _blank>coronavirus browser</a>. </div> <!-- Cell browser --> <div class="col-md-6"> <h2>UCSC Cell Browser view of lung gene expression datasets</h2> <a href="https://cells.ucsc.edu/?bp=lung" target="_blank"> <img src="../images/cellBrowserAce2EilsLung.png"></a> </div> </div> +<h2 id="news">News</h2> +<ul> +<li>May 29, 2020: Release of public track hub +<a target="_blank" +href="http://ftp.ebi.ac.uk/pub/databases/gencode/covid19_trackhub/COVID19_Hub.html"> +GENCODE annotation of COVID-19 associated genes</a>. +View in <a target="_blank" +href="https://genome-test.gi.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://ftp.ebi.ac.uk/pub/databases/gencode/covid19_trackhub/hub.txt&genome=hg38&position=lastDbPos" > +browser</a>. </li> + +<li><a target="_blank" href="goldenPath/newsarch.html#051220">Video: +Coronavirus Browser SARS CoV-2</a></li> +<li><a target="_blank" href="goldenPath/newsarch.html#050420">May +data release for SARS-CoV-2 genome browser</a></li> +<li><a target="_blank" href="goldenPath/newsarch.html#040320">April +data release for SARS-CoV-2 genome browser</a></li> +</ul> + <h2 id="related">Related publications and data resources</h2> <ul> - <li> Preprints of research manuscripts: <a href="https://connect.biorxiv.org/relate/content/181" target="_blank">BioRxiv/MedRxiv COVID-19 Collection</a> (all freely available)</li> <li><a target="_blank" href="https://pages.semanticscholar.org/coronavirus-research">COVID-19 Open Research Dataset</a> of scholarly literature</li> <li> NIH Office of Data Science Strategy <a target="_blank" href="https://datascience.nih.gov/covid-19-open-access-resources">Open-Access Data and Computational Resources to Address COVID-19</a> </li> <li> European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL-EBI) and partners: <a target="_blank" href="https://www.covid19dataportal.org/"> COVID-19 Data Portal</a> </li> @@ -141,41 +158,30 @@ <li> Nature News graphical guide to vaccine designs: <a target="_blank" href="https://www.nature.com/articles/d41586-020-01221-y"> The Race for Coronavirus Vaccines</a> </li> <li> <a target="_blank" href="https://www.nytimes.com/interactive/2020/04/03/science/coronavirus-genome-bad-news-wrapped-in-protein.html"> Inside the Coronavirus Genome</a>, and <a target="_blank" href="https://www.nytimes.com/interactive/2020/04/30/science/coronavirus-mutations.html"> How Coronavirus Mutates and Spreads</a>, The New York Times </li> </ul> -<h2 id="news">News</h2> -<ul> -<li><a target="_blank" href="goldenPath/newsarch.html#051220">Video: -Coronavirus Browser SARS CoV-2</a></li> -<li><a target="_blank" href="goldenPath/newsarch.html#050420">May -data release for SARS-CoV-2 genome browser</a></li> -<li><a target="_blank" href="goldenPath/newsarch.html#040320">April -data release for SARS-CoV-2 genome browser</a></li> - -</ul> - <h2 id="funding">Funding</h2> <p> The <a target="_blank" href="https://genome.ucsc.edu"> UCSC Genome Browser</a> is a publicly available web resource serving the research community since July 2000. Both the Genome Browser and UCSC Cell Browser are funded by the <a target="_blank" href="https://www.genome.gov/">NIH National Human Genome Research Institute</a>. In addition to this funding, the COVID-19 projects here are funded by generous supporters including: several anonymous donors; Pat and Roland Rebele; Eric and Wendy Schmidt by recommendation of the <a target="_blank" href="https://schmidtfutures.com/">Schmidt Futures</a> program; the Center for Information Technology Research in the Interest of Society (<a target="_blank" href="https://citris-uc.org/">CITRIS</a>); and the University of California Office of the President (<a target="_blank" href="https://www.universityofcalifornia.edu/uc-system/office-of-the-president">UCOP</a>). To contribute, click <a target="_blank"