77c4d21730d2f08b5b40ef01e1cab94f46c1b2ed kuhn Fri May 29 10:39:27 2020 -0700 grammar tweak. added italics diff --git src/hg/htdocs/goldenPath/help/hic.html src/hg/htdocs/goldenPath/help/hic.html index dbdffff..6058ce8 100755 --- src/hg/htdocs/goldenPath/help/hic.html +++ src/hg/htdocs/goldenPath/help/hic.html @@ -1,31 +1,31 @@ <!DOCTYPE html> <!--#set var="TITLE" value="Genome Browser hic Track Format" --> <!--#set var="ROOT" value="../.." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <h1>hic Track Format</h1> <p> <a href="https://github.com/aidenlab/juicer/wiki/Data/#hic-files" target="_blank">Hic format</a> is an indexed binary format designed to permit fast random access to contact matrix heatmaps. The format was designed by the <a href="https://www.aidenlab.org/" target="_blank">Aiden Lab</a> at <a href="https://www.bcm.edu/" target="_blank">Baylor College of Medicine</a>. </p><p> The format is used for displaying chromatin conformation data in the browser. After running a -chromatin conformation experiment like in situ Hi-C, researchers can pass their results through +chromatin conformation experiment such as <em>in situ</em> Hi-C, researchers can pass their results through the <a href="https://github.com/aidenlab/juicer/wiki" target="_blank">Juicer</a> pipeline to produce a hic file. Due to the large size of many of these files, UCSC is not able to support direct upload via our Custom Track interface. Instead, users should place their Hic files in a web-accessible space and enter the URL as a bigDataUrl. If you do not have access to a web-accessible server and need hosting space for your Hic files, please see the <a href="hgTrackHubHelp.html#Hosting">Hosting</a> section of the Track Hub Help documentation.</p> <p>The UCSC tools currently support hic versions 6-8.</p> <h2>Generating a hic track</h2> <p> The typical workflow for generating a hic custom track is this:</p> <ol> <li> Prepare your data by processing it with the <a href= "https://github.com/aidenlab/juicer/wiki"