98b25e3170373c357d24b1cbf66d04bf74396112 lrnassar Wed May 27 16:44:41 2020 -0700 Fixing up trackDbIndexBb based on CR feedback, refs #25590 diff --git src/utils/trackDbIndexBb/tests/makefile src/utils/trackDbIndexBb/tests/makefile index 74d9ff9..299aed4 100644 --- src/utils/trackDbIndexBb/tests/makefile +++ src/utils/trackDbIndexBb/tests/makefile @@ -1,16 +1,18 @@ kentSrc = ../../.. include ../../../inc/common.mk all: mkdir -p out # alas, our automated tests cannot output anything to stderr, as otherwise emails will be sent - python2 ${DESTBINDIR}/trackDbIndexBb -t uniformDnase -r in/trackDb.smallExample.txt -c in/hg19.chrom.sizes -o out/ -p /cluster/bin/bedtools/bedtools -m metadata -s lab 2> /dev/null + python2 ${DESTBINDIR}/trackDbIndexBb -t uniformDnase -r in/trackDb.smallExample.ra \ +-c in/hg19.chrom.sizes -o out/ -p /cluster/bin/bedtools/bedtools -m metadata -s lab 2> /dev/null diff out/uniformDnase.multiBed.bb expected/uniformDnase.multiBed.bb diff out/uniformDnase.multiBedSources.tab expected/uniformDnase.multiBedSources.tab - python3 ${DESTBINDIR}/trackDbIndexBb -t uniformDnase -r in/trackDb.smallExample.txt -c in/hg19.chrom.sizes -o out/ -p /cluster/bin/bedtools/bedtools -m metadata -s lab 2> /dev/null + python3 ${DESTBINDIR}/trackDbIndexBb -t uniformDnase -r in/trackDb.smallExample.ra \ +-c in/hg19.chrom.sizes -o out/ -p /cluster/bin/bedtools/bedtools -m metadata -s lab 2> /dev/null diff out/uniformDnase.multiBed.bb expected/uniformDnase.multiBed.bb diff out/uniformDnase.multiBedSources.tab expected/uniformDnase.multiBedSources.tab clean: rm -f out/*