d41531259de6cb8aafd3b0d336518f2e8d6cfb61 markd Tue May 26 17:13:04 2020 -0700 Hiram is right, this is useless; what is really needed is for mafOrder to have an option to orient the reference sequence to the positive strand diff --git src/hg/ratStuff/mafRc/expected/testHg16-rc.maf src/hg/ratStuff/mafRc/expected/testHg16-rc.maf deleted file mode 100644 index b1d0954..0000000 --- src/hg/ratStuff/mafRc/expected/testHg16-rc.maf +++ /dev/null @@ -1,501 +0,0 @@ -##maf version=1 scoring=zero -a score=0.000000 -s NM_014406 100 100 - 100 CTTGGTGGCTGAAATGGGATCTTTAACTGATGAAGTCACAAAGTGGAAAATGGAACCAG-GATAGAGAATGAGGTCACAGAAGGCTGGTTAGAACTGAGGA -s mm3 0 0 - 0 ..................................................................................................... -s rn3 96 96 - 96 CTACATGAGCTAGATTGCCCCT----CTGATGAAGTCACAAAGTAGCAAATGGAACCAGAGACAGGGAGTGAAGTCACAGAGGGACAGTAAGCA-TGAGGA - -a score=0.000000 -s NM_015860 100 100 - 100 gacacgcacgcgcgcaggggccgggcggggagcgggcgggcgggcggCGTG-Aggggcgccggcctccggggtctccgcccgcggcccctcccccgggccg -s mm3 0 0 - 0 ..................................................................................................... -s rn3 52 52 - 52 GACACGCACTCACACA------CATCGGCGCGGGCGCGCGCACTCGGCGCGCAGGGGC........................................... - -a score=0.000000 -s NM_175878 100 100 - 100 tcaaaagattttgttacaagaataatcagaagaattagattctaactctgtaggcagcaggtatctaggaaacctcgtgcttcaatttcatataaattga -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_014339 100 100 - 100 CGGGCCCAGGGGCGGGCCGGGCCGAGGGGAGGAGTTTAGTCTGGGACGGGGAGGGGTTTAGGGTGAGACAGGGCCCTCCCCCCGTTCCTCCTTGCGCCCC -s mm3 0 0 - 0 .................................................................................................... -s rn3 64 64 - 64 C--CCCCGAGGGCGGGCCG---CTCGGGGCGGGGCTT-----------GGGCGGGGCT--------------GTCCTTCCTCTGGCCC------CGCCCC - -a score=0.000000 -s NM_031890 100 100 - 100 GGGCCGGGCGGCGGCGAGATCCGGACTGGAGCCACTGGACTGGGCGAGCCGGGC--CGGGCGGCAGGGAGAGGGGGCAGGCGGTGAACCGAGCGGACCGCGG -s mm3 0 0 - 0 ...................................................................................................... -s rn3 102 102 - 102 GGGTCGGGAGGCGGAGAGATCCGGACTGGAGCGGCCGGACTGGGCGAGCGGAGCCGCGGGTGGCTGGGCTGGGGGAGAGCCGGGGAGCCGAGCAGACCGCCG - -a score=0.000000 -s NM_033070 100 100 - 100 TGCGCACGTGCACGGCG--------------TGCGGCCCCCCCCCCCCGCGAGTCCGTCCGCTGCACAGCCAATCAGCGGTCG-GCGCGCGCGGCATCACGGGAGTTGTAGTCCt -s mm3 0 0 - 0 ................................................................................................................... -s rn3 107 107 - 107 CGCACGCGTAGACTGCGGGTCTCGCCTACTCTGGAGCCCCCTCCCCGCGCA-------CAACCGAGCAACCAATCAGCGGCCGCCCGCGCGGAGCCTCTCGGGGGTGGTAGTCC. - -a score=0.000000 -s NM_017829 100 100 - 100 aagtctgtgttctgcctgtccctgcagcacggagggctgggctttatacctgtgccaaggacaccaacggcagcatcagcaagtccgtgttgtctcccaa -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_177405 100 100 - 100 gctcagagagcccagcgcggtgaggaaagcgacgaacttaggagccctggtctgggtccagccaccccttactacctatttgaccttcatcaagctcttt -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_017424 100 100 - 100 tttttttttttttttttttgagacggagtctcgctctgctgcccaggctggagcacggtggtgcaatctcggctcactgcgagctccgcctcctgggttc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_031481 100 100 - 100 GATTCTGGGAGCATGTCATGCTTTCTCGAACCTGCAGGAGTCTCAAGGGCACCTGCATTGATATGCATGTCATGGCTGTAGAAGGGGGCTGGGATTGCAG -s mm3 0 0 - 0 .................................................................................................... -s rn3 97 97 - 97 GATTCTAGGAGCAAGTTGTGGTTTTCCACTCCTCACAAAGTCTCAAGG-CACCTGAATTAAAATTCGTGTCATGGAGGCAGA--GGGGCAGGGACTCCAG - -a score=0.000000 -s NM_001696 100 100 - 100 GCCAGGTGACTGCACAGTTCATCCTCATGACCCTTCTCAGCCAATGGGAAGAGAGCGACGCCCA-GGAAGTCCCGCCCTGTCCCGGCCTGTGGGCGCGTCC -s mm3 0 0 - 0 ..................................................................................................... -s rn3 81 81 - 81 ACCAGTTGACCAAGAGG--------CGGTAGCTTTCTGAACCAATAGATCAAGAACTGTGCCCGCGGAAGTTCCGCCCTGCCCCCGCCC------------ - -a score=0.000000 -s NM_015367 100 100 - 100 GAAGATAGGACAAAA-GAAAAACCTAATATAATAAACAATATCTataaaattagctgggtgtggtggcacatgcctgtaatcccagctactcaggaggctg -s mm3 0 0 - 0 ..................................................................................................... -s rn3 44 44 - 44 GAAGACAAGGCAAAAGGAAAGACCAAAATTAGTAAGCGGTCCCT......................................................... - -a score=0.000000 -s NM_197966 100 100 - 100 ctcctctccggggctggcctcggcccctccccctccccgcgccccgcacccctcccctgaatccccaggccacgtggagaggacacaacaaagccttccc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_197967 100 100 - 100 ttcggccccccacgcccgggcccgccccggcccgccccggcccgcccccggcggcttgcggggacccggggagcccgcgccggcgcggggctgtggagcg -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_001196 100 100 - 100 ttcggccccccacgcccgggcccgccccggcccgccccggcccgcccccggcggcttgcggggacccggggagcccgcgccggcgcggggctgtggagcg -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_178503 100 100 - 100 gaggaagaggggctgaattttcacaggaagacgagcccggtggcaggaagtgacagtgagaaactgcagcataaagcggaagcaaaggccgactgtgact -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_017929 100 100 - 100 AATGGAAGTAGGAGGCAGAGCGCGGACTACAACCCCCAGCACGCCGCGCCCCGGAAGCCGCCCCTGTGCCGTGAGAAAACAAACTGGTGCTACAGCTTCG -s mm3 0 0 - 0 .................................................................................................... -s rn3 74 74 - 74 -GTGAAGCTTCGGGG---------------AACCTCTGGC--------TCCCAGAGACTGTCATCTTCCA--GAAATAACTCACCAGATCACCAGCTTCG - -a score=0.000000 -s NM_018943 100 100 - 100 CCGCCGTTGTGACACACCGGGAGGGGGGGACGCCGGGGACAGGCGCGCCGGGCCCGCAGCTGCCCCCCGGCATCACAGTGCC------GGGGAGGGGC--GGGCAGGT -s mm3 0 0 - 0 ............................................................................................................ -s rn3 107 107 - 107 CCGCGGTTGTGACACACTGTGAGGGAGGGG-GCCTGAGACAGACATGCTGGGCCAGCAGTTGCCCTGCAGCATCACAGTACCCGCGGAGGGGAGGGACCTGGGTAGGT - -a score=0.000000 -s NM_017414 100 100 - 100 gcggctgccgttgcagccgcgcacctgctccagacttccagccctcgctttttttttttttttttttttttgagacggagtctcattctgtcgtccaggc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_005675 100 100 - 100 TAGCGCAG--------CGCGCCCCGCCCGTCTTAGGACAGTCCCCG--------ATCGCGGCGCGCCTCGCGCCTTC---CCCGCCCCACCacgcgccccgccccttgcgtcattcaga -s mm3 0 0 - 0 ....................................................................................................................... -s rn3 89 89 - 89 CAGCGCGGATGACGCATGCGCCCCGCC--TCTCCGGTCAGTCTCAGTCTGGCTCGGCAGGGTGCGTCACGCACATTCAGGCGCGTCCCACC............................ - -a score=0.000000 -s NM_016335 100 100 - 100 ctgtctcaaaacaaaaattatgtattttcagatagcttgaaggagaatattgagtgttcgtaatgcaaagaaataataaatgtttgagatgataggtatg -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_005137 100 100 - 100 GACTCCAGCTGCGCGCAAGATGGCGGccgtcctgctcggctccgcgccgcgccgccccgccccgcctcccgcccGCG-ACGCAGGCGCGGGCCAATGACCG -s mm3 0 0 - 0 ..................................................................................................... -s rn3 100 100 - 100 GATTCCGGCT-CGCGCAAGATGGCGGCCGTCCTGCTCCAGCCCGCGCTACCCCGCCTCCAACCAGCATTAACCAATGAACGCAGAGCTGGGCGGGAGGTGG - -a score=0.000000 -s NM_053006 100 100 - 100 AGGGGTGGAACACTCAGCATTGTCTCCGGGTGACTTCAGCCAATGAACTCATAAAGCCAAGGAG-TGGGGGCGGGGACTGGGCTGAGGGAGAACAGGGTCT -s mm3 0 0 - 0 ..................................................................................................... -s rn3 97 97 - 97 -GGAGTGGAACGCTCAGCATTGTCACCAAGTGAC--CAGCGAATGAAGTCATAAAGCTGGGCTGCTGGGAGTGGGGACTAGGCTT-GGGGGAATGGGGCCC - -a score=0.000000 -s NM_022719 100 100 - 100 AGGAAAAAGCTCGGGCCCAGCAGGCGCGTCACAGGGTGGAGGGGGCGGGACTGCACCATTTGCGCAGGCGCCTCCAATAGTTGGCCAATGGAAAAGCTGT -s mm3 0 0 - 0 .................................................................................................... -s rn3 56 56 - 56 AG--AACCGCCCGGGC------------------------GGCGTCGGCACCG------------------CTCCAACAGTCAGCCAATGGAGAAACAGT - -a score=0.000000 -s NM_005984 100 100 - 100 GGGGCGGGGCGGCCGCGTCAGCT-CCAGGTCCCGCCCCGCGTGGTCCGAGCCAGGCCCCGCCCCCAGCCCGCCCCGTGCGGGCCGGGAAACTGAGGCCTGG -s mm3 0 0 - 0 ..................................................................................................... -s rn3 101 101 - 101 GAGGCGGGGTGGTCACGTCAGCTCCCCGGCTCCGCCCCGCGTGGCCTGAGCTGAGCCCCGCCCACGCCACGCCCCGTGCCAGCCGGGAAACTGAGGCTTGG - -a score=0.000000 -s NM_001835 100 100 - 100 gaacgccgacccctcgcgcgggctgaccggtggcgacggcgcaggcgcagtgccccgagctcccggtcctggcccccgccctcctccctgaccgcgcccc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_007098 100 100 - 100 gaacgccgacccctcgcgcgggctgaccggtggcgacggcgcaggcgcagtgccccgagctcccggtcctggcccccgccctcctccctgaccgcgcccc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_003325 100 100 - 100 ccctgcgccgcTCCTCCTCAGGCGGCTCCCGGGCAACGCCGGAAGTCACGGCGCGCACCTGCCAAATCGCCCCGGCGGGAAACCGCTCCCCACGCGGACT -s mm3 0 0 - 0 .................................................................................................... -s rn3 100 100 - 100 CCCTGCGCCGCTCCTCCTCCGGCGGCTCCGGGACAACGCCGGAAGTCACGGCGCGCACCTGCCAAATCGCCCCGGCGGGAAACCGCTCCCTACGCGGACC - -a score=0.000000 -s NM_003776 100 100 - 100 GGCCCGCGGTGCCCCCTGCTGAGGTCCGGCAGACCAGGCGCCCAGCGCTCAGGCGTTCCGGCTGCGTG---GGCTGGGACGCGCCTGTCCCCGCCCCCGACGC -s mm3 0 0 - 0 ....................................................................................................... -s rn3 98 98 - 98 GACTTGAGGTA---CCGGGTAAGGTCTGTCAGGCCTCA-GCCCGGAACTC-GCCGGTACGGAGTTGGGAGAGGCGGGCCCGGAGCTGGCCCCGCCTTCGAGGA - -a score=0.000000 -s NM_173793 100 100 - 100 TCTGGGcgaccggcgcgccaagcccgcccctcagtccgccagccaatgaaaaatgaagaaaacggcacctcgtgatcgactgacagaagaactaatgagc -s mm3 0 0 - 0 .................................................................................................... -s rn3 6 6 - 6 TCCAGG.............................................................................................. - -a score=0.000000 -s NM_005659 100 100 - 100 CGCTGCCGCTGCCGCCGCGCCAAG--CCGGTACGCCCCAGAGGCTCACCGGAAGTGCCGGACCCGAGACCCGGAGGGGGGGTGCCCGGGACAAAGCGTCGGC -s mm3 0 0 - 0 ...................................................................................................... -s rn3 94 94 - 94 -GCAGCCGAGGCCACCGCTCTGAAGCCCAGAACCCGCGAGAGGCTCGCCGGAAGTGACGAACGGAGGGGGCGGGGTACGGAGGCCTGGA-------GTCAGC - -a score=0.000000 -s NM_003504 100 100 - 100 ACGGCTCCTCCGATTGGTCCAGGGATCACCAACCAATAGCTTCTTAGTTCCCAGCCTTCCTTTCTTTCTGATTGGGCCACATTGGAGGCGGCCATTAGCG -s mm3 0 0 - 0 .................................................................................................... -s rn3 89 89 - 89 ACAGCTCTTCCGATTGGTCCACG--CCAGCAGCCAA--------TAGTTCTTAGTCTTTCCTCCTTTCTGATTGGGTCCTA-CGGGGACAGCCAATAATG - -a score=0.000000 -s NM_003277 100 100 - 100 GTTTGCCCCGCGGG---TCTGTCGCACCTCCTGGGTCTGCCAGCTCCTGCCGGGGGGTACCCTCTTTGAAGGTTC-GGGGGCGGATTCTGTcccccgggcccgg -s mm3 0 0 - 0 ........................................................................................................ -s rn3 94 94 - 94 ---------GAGAGGTTTCAACCACACCAACTCGGTTTTGCAGTGGTCGGTTGGGGATGTCTTATTTGAAGTCTCGGGGGGCGGACTCTGCCCCCAGGGGCAG- - -a score=0.000000 -s NM_002688 100 100 - 100 agcggcccctccgcgccgccgccgccgccgcccgctccgcccgcgcgcccggcagccaatcggcgcccgccgcgcccacgcgcgacccagggcggcccgg -s mm3 0 0 - 0 .................................................................................................... -s rn3 35 35 - 35 .................................................................CCCGCCGCGCCCACGCGCGACCCGGAGAGGCCGGT - -a score=0.000000 -s NM_000407 100 100 - 100 CTGCAGCGGGAGGCGTAGGCGGGAGAGCCGAGCGATAAGGCCGCCCCGCCCCTGCCACGCCCGCACCGACCACAGTGCTGCGGCCTGGCCAGAAATAGCC -s mm3 0 0 - 0 .................................................................................................... -s rn3 78 78 - 78 CTG----GAGTGGCGTTGGCCCGAGAGCCTG-------------CCTGACTCCACAGCA-----ACAGACCACAGTTCTGCCGCCTGGCCAGAAATAACT - -a score=0.000000 -s NM_080647 100 100 - 100 CCGCACCTCCACACCCGCGCGATAGGAGGCCTGACTGGGAGCTCCCTTGCGTGGATCAGGAAGGTGAGGCGCGGCTAGGGGTCGCAGGGTCTGATTCCTC -s mm3 0 0 - 0 .................................................................................................... -s rn3 86 86 - 86 CGGCGCCTC--CACCTTAGCGGTAAGGGGCTAGAATGTGAGC-----CAAGTGGTTT------GTGCGCAGGGGTCAAGAGCTACACCTCTTGA-CCCTG - -a score=0.000000 -s NM_080646 100 100 - 100 CCGCACCTCCACACCCGCGCGATAGGAGGCCTGACTGGGAGCTCCCTTGCGTGGATCAGGAAGGTGAGGCGCGGCTAGGGGTCGCAGGGTCTGATTCCTC -s mm3 0 0 - 0 .................................................................................................... -s rn3 86 86 - 86 CGGCGCCTC--CACCTTAGCGGTAAGGGGCTAGAATGTGAGC-----CAAGTGGTTT------GTGCGCAGGGGTCAAGAGCTACACCTCTTGA-CCCTG - -a score=0.000000 -s NM_005992 100 100 - 100 CCGCACCTCCACACCCGCGCGATAGGAGGCCTGACTGGGAGCTCCCTTGCGTGGATCAGGAAGGTGAGGCGCGGCTAGGGGTCGCAGGGTCTGATTCCTC -s mm3 0 0 - 0 .................................................................................................... -s rn3 86 86 - 86 CGGCGCCTC--CACCTTAGCGGTAAGGGGCTAGAATGTGAGC-----CAAGTGGTTT------GTGCGCAGGGGTCAAGAGCTACACCTCTTGA-CCCTG - -a score=0.000000 -s NM_024627 100 100 - 100 AAGAG-----AGGAGAGCCAGCACTGGTGGGTGGTGGGGGTGTGGACAGATGTGGCTTGCACGACACAACAGGAC-AGGGATGGCTGAACAGGGCGTGGCAGACCC -s mm3 0 0 - 0 .......................................................................................................... -s rn3 87 87 - 87 AAGTGCTCACAGAAGACCT-------------------GGTGTGGACAGAAGAGGCAGGCACAACACAATAGGCCAAGGAACAGCTGGGCAGGGTGTAGCAGGCTG - -a score=0.000000 -s NM_053004 100 100 - 100 CTCCCGGCACGC-----------TCCACGCGCTCCTCCCATCCAGGCCGCGCCTGCGCTGTATGCCGTGTGGCCGCTACCTCGCAGGCTCTCCCGGTCCCTGCTGGCGCGG -s mm3 0 0 - 0 ............................................................................................................... -s rn3 96 96 - 96 CCCCAAGTTAGCCTTCCCGCGGGTCTGCGCGCGCACCTCGGCCC-GCCGCGCCTGCGCCGTGAACAACGAACCCTCAGTCTTGCAGGC-------GTCC-----GGCGC-- - -a score=0.000000 -s NM_145748 100 100 - 100 gacacccagcaccaggcaccagccaactccctgctgaaggaaggaagaaataatagcaagtcatcagtctgctggggtgagggcagggtggggactgatg -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_145747 100 100 - 100 atccacctcatgatactaaaggtatcatagttcatactagtctcattaattctgattcctctgatgagattaaacttatgtaaacttatggtgtctgcca -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_006440 100 100 - 100 TCGGACCGCTGTGAAGTGATCTGACGTTGGGTGGGAGTCTCCGGACTTGGGGTGGGGAATCTGGATGGGAACTGGGGAA--TTCGGACCTTGGGTGGGGATC -s mm3 0 0 - 0 ...................................................................................................... -s rn3 91 91 - 91 CCATAC--GTGGGAACTGGGCTGACCTAGGGGAG-----CGCGAGCCAGGGCTGGAGAATGTAGAC----ACTTGTAAAGGGTCTGATCTGGGCTGGAGGTC - -a score=0.000000 -s NM_000754 100 100 - 100 GCGCTGCGGGGATTAGGAGGGCGCTTCCGGTGGCGGACGCAGGCCGTggcgggcggggtgcggggcgcggcgcg------gggcgcAGC---AGGTAGGATGGGGTCGG -s mm3 0 0 - 0 ............................................................................................................. -s rn3 109 109 - 109 GCGCTGCGCGGATCCAGCGGGCGCTTCCGGCCGCAGACACGGGTTTTAACACGCGGGACGCGGGGCGCGGCGGGCGCGGCGAGCGCAGCGGGAGGTAGGGTGGGGTCGT - -a score=0.000000 -s NM_007310 100 100 - 100 agAGGCGGGGCCTCCGGCATCTGCAGGGCGGGAGGGGAG------GGGCGCCAGTGCTCTGTGCTCCTCCTGCAGCACCCACACGCCCCTTTGCTTGGAGTGCCAC -s mm3 0 0 - 0 .......................................................................................................... -s rn3 81 81 - 81 --------------CGGCATCTGCAGGGCGGGGGCAGAGCAGACAGGCTGT--GTGTCTTGTGCCCTTCCTGC----CTCACCCCACCCTGTTCTTGG-----CTT - -a score=0.000000 -s NM_001670 100 100 - 100 CCGGGCCAGCCCTCCCGCCC-TCACGCGGCCCGTGCGCAAAGCGGACCGGGCCGGCGACGCGAATCTCCGCCCCGCCCCATCTGACAGCAAATTTTCCCAT -s mm3 0 0 - 0 ..................................................................................................... -s rn3 99 99 - 99 -CAGGCTAGCCCTCCCACCCCTCCCGCGGCCCGTGCGCAAAGCGGACCTGGCTGGAGACGAGG-CCTCCGCCCCGCCCCATCCAACCGCGAATTTTCCTAT - -a score=0.000000 -s NM_152906 100 100 - 100 CTTCCGGGTGCCGCGCCCGCGCGCCACCGCAGCCAGCCCAGTACCG-CCCAGCCCGAAGCCGGCGCGTTCACCATTGGGCCGCGCAGCGAGGGGCGGGGCG -s mm3 0 0 - 0 ..................................................................................................... -s rn3 101 101 - 101 CTTCCGGGTGCCGCACCCGCGCACCTTAGCTGCCAGCCCAGGACCGGCCCGGCCCGCCGCCAGAGCGCTCCCTATTGAGCGCAGTAGCGAGGGGCGGAGCG - -a score=0.000000 -s NM_022775 100 100 - 100 CTAACTCATCGAGCACTGCATACTCCACTCTCTTTTCCTGATCCAGCTCATTCTCCTCATCCTTCTTATCAGCACTCTCACCCCCTATGCCTACCCCGTC -s mm3 0 0 - 0 .................................................................................................... -s rn3 100 100 - 100 CTAACTCATCGAGCACTGCATACTCCACTCTCTTTTCCTGATCCAGCTCATTTTCCTCATCCTTCTTATCTGTACTCTCACCCCCTAGGCCTACCCCATT - -a score=0.000000 -s NM_182984 100 100 - 100 ACTCTTAGTCCGCCAGCGCGTGCGGCGGAGGCCGAG-----CGTCTCTATGATCCTGGCTTCTGGCAACGTCATCGTCACGCGCCGGATCCAA----------CCCCCAACCACT -s mm3 0 0 - 0 ................................................................................................................... -s rn3 107 107 - 107 ---TTTAGTCGGCCAGCGAACCC-----CGGCCGCGTTTCTTTTCTCTGAGGGCTTGGCTTCCGATGACGTCACCGCCACGCGCCGAGTCCAGACTGATCCTTCCACTAGCCGCT - -a score=0.000000 -s NM_022727 100 100 - 100 GTCATCGTCACGCGCCGGATCCAA----------CCCCCAACCACTTTAGCCAGCTCTAGAGGCGCGCGTGGCCGG--GACGGAAGTGCGCGCGGGTGTCGCCGGGAGTGCG -s mm3 0 0 - 0 ................................................................................................................ -s rn3 112 112 - 112 GTCACCGCCACGCGCCGAGTCCAGACTGATCCTTCCACTAGCCGCTCACGCTAGCGTCAGAGGCACTCACAGGTTGCAGACGGAAGTGTGCGCGTGGGTCGACGGGAGAGCG - -a score=0.000000 -s NM_002882 100 100 - 100 ACCCCTGACCCCAGCGGCGGGAAACGCGCCGCGATTCAAAACCAGTACAGCTTTATTGGCTCAGGAGGCGGACACTCTCATTGTCCGGCCCGCCCCGCGC -s mm3 0 0 - 0 .................................................................................................... -s rn3 98 98 - 98 ACCCCTGACCCCAGCGGCGGGAAACGCGCAGTGATTCAAAACCAGTGCAGCTTTATTGGCTCTGACGGCGGACATTC--ATTGTCCGGCCCGCCCCGCGC - -a score=0.000000 -s NM_013373 100 100 - 100 ggcggcggcggcggcggcggAGGAAATCCCACCCCACGGGCGGCGGCGGCTGCTGCGCTCTTATGTCAGCGCGCCCCTTAAGGTggaccgggcgctgggg -s mm3 0 0 - 0 .................................................................................................... -s rn3 92 92 - 92 ----GCGGCAGCGGCAGTGGAGGAAATCCCACCCCACGGGCGGCGGCG---GCGGCGCGCTGATGTCAGCGCGCCCCTTAAGGTGGACCCGGCGGC-AGG - -a score=0.000000 -s NM_152508 100 100 - 100 gctgagaagggaaaagcgtggtccctttaaatgatacagaggagggacgggaagtgctccgtagagaagggcgtggtccctgcctagggctccaccccca -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_023004 100 100 - 100 ccgcccggctctggctgggct--cgggccgcgggtgcgcagggcg-----------------------------cgcagggcgcacagggcg----------------------------------------------------------------------agggcggcggcggcgcgggggttggggc--------------------gtgggcggcgc -s mm3 0 0 - 0 ............................................................................................................................................................................................................................. -s rn3 220 220 - 220 CTACCGGGC-CGGGCTGGGCTCACGGGCTGCGGGCACACAGGGCGAGGGCGGCGGCGCGGACTGGCGGGGCGCTCGCAGCGCGGGCCGGGAGCGGATGAATGTTTTATGGGATCATGTGGTTTGACGCGCGGAATCCGCCCGGTCTCCCCGCCGGCCCGGGCGGGGCGGGGCCGGGGCGGGGCCTGGCGCCGGGCGGGGCGCTCACCTGGGCGCGCGGCGC - -a score=0.000000 -s NM_033257 100 100 - 100 ACGCGCGG--------CGCGCTCCGCCCCCTTTTACGACAGTCCCGAGAGGGCCTggccgcctgccccgccctgccccgcgccccgccgccTGCTTATTCAGGAGGCG -s mm3 0 0 - 0 ............................................................................................................ -s rn3 80 80 - 80 CAGCGCGGATGACGCATGCGCCCCGCCTC---TCCGGTCAGTCTCAGTCTGGCTCGGCAGGGTGCGTCAC----------------------GCACATTC---AGGCG - -a score=0.000000 -s NM_003426 100 100 - 100 AC----TGCGACTGCCACAAAGAGCAGCAGGCGGCCGCTGCGGGAAAGCGCGCCTGCGCGAAATAGGCGCAAACTACACCTCCCGGGAGCGTTTGCGCCGCGCA -s mm3 0 0 - 0 ........................................................................................................ -s rn3 96 96 - 96 ACACATAGCCATAGCCACATTGA--------CAGTTGCCGAGGGTTAATGCTCCTGCTGGGAGCAGGTATAGACTACATTTCCCAGGAGGCTGTGCGTTATATA - -a score=0.000000 -s NM_153334 100 100 - 100 gagccgggcaggaaattccacatcggctccctgatcccgggccagccgcggccggccaggcggcagcgcccgccccgcgctccagaccccaccctccggc -s mm3 0 0 - 0 .................................................................................................... -s rn3 31 31 - 31 .....................................................................CCGCCCCGCGCGCCAGACCCCACCCTCCGGT - -a score=0.000000 -s NM_182895 100 100 - 100 gagccgggcaggaaattccacatcggctccctgatcccgggccagccgcggccggccaggcggcagcgcccgccccgcgctccagaccccaccctccggc -s mm3 0 0 - 0 .................................................................................................... -s rn3 31 31 - 31 .....................................................................CCGCCCCGCGCGCCAGACCCCACCCTCCGGT - -a score=0.000000 -s NM_032775 100 100 - 100 gaggcTGGGCGAGAGGAGCCGGCGGGGCGGGGGCCTGGGCCGTCACGTGGGTGCGCCGCGCAGGCGCCGGGCGGGCCAGACGTAGGCCCGGGGGTTCCCG -s mm3 0 0 - 0 .................................................................................................... -s rn3 64 64 - 64 -----------------------GGGGCGGAGCCTC--ACCGTCACGTGTG-ATGCTGCGCAGGCG-CAAGTGGACTA---------CAGGGGGATCGCT - -a score=0.000000 -s NM_015889 100 100 - 100 GCCACCGCCGCCGCCTCAGTCACAGAGCCAGGCCC-AAACCCGGAAGCCGTCCG---CAGTGCCTCGGCCGAGCCGGAAGTGAAGGAGGGCTTGTGGGAAATGG -s mm3 0 0 - 0 ........................................................................................................ -s rn3 104 104 - 104 GCCGCCGCTGCCGCCTCTACCACAGCGACAGGCCCGGAACGCGGAAGCCTAGCGATCCCGCTACTGGGCCACACCGGAAGTACAGAGAGGATTGTGGGAAATGG - -a score=0.000000 -s NM_032262 100 100 - 100 ggtcaccatctattaataattttttttttttttctgagacagagtctcactctgttgcccaggctggagtgcagtggcacaatcttggctcactgcaacc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_002650 100 100 - 100 agaaaagtatgaagaaaaaaatgaagatcgcctatagtcccacatcccagggtcatctgtgtcagtgcttggtgtattttctccagcctctCGAGGCTGC -s mm3 0 0 - 0 .................................................................................................... -s rn3 88 88 - 88 AACAAAGT---AAGAAACAGTT--------CCACGGAACCCATGTCTCAGGG-CAGCTACTTAAGTCTTTGGTATGCTTCCTCCAGCCTCCCCCCATCCC - -a score=0.000000 -s NM_000185 100 100 - 100 TCATCAGTGGGATTTTGATGTGAACTTTGGTGCTGGGCTGTTGCTGCATATTTTCCAAAGTAAATAAGTCCCAATCCAAACACCAGGCAACCAGCTTGGT -s mm3 0 0 - 0 .................................................................................................... -s rn3 96 96 - 96 CCACCAGCAGT-TTTCAGGGTGAACTTTGGTGCTGAGCTGT---TGTGTGTTTTCCAAAGCAAATATGTCCTAATTCAAACACTACTCAAGTAGCTTTGT - -a score=0.000000 -s NM_004782 100 100 - 100 TTCCGCGCGTCGCGCGCAGGTGGCCCCGCCCTCGGAGCCGACCATCGCGCAGGTCGGCTGGGGGGGGC----CCACATCCGGCGCGCGCAaccgcagcctactg -s mm3 0 0 - 0 ........................................................................................................ -s rn3 89 89 - 89 TTCCGCCAGTACTGCGCTAG-AGCCCCGCCTCCAGAGCTAACCACTACGCGGAGCTGCAGAGGGGAACCAGGCCCCACCCAGTGCGAGGG.............. - -a score=0.000000 -s NM_005207 100 100 - 100 CTCAGCGCGCTCCGTCTGCGCACGC-----GCTgggccccggctcccggcggccgccggggcccTCCCGTT-ACGTCACACAGCGCAGCCAATCAGGAGCACCGTC -s mm3 0 0 - 0 .......................................................................................................... -s rn3 101 101 - 101 TCCAGCGTACTCTATCTGCGCTTGCGCGGAGCTGGGCGCTACCCCC-----ACCGCAGGGGCTCTTCCTTTGACGTCACTGGGCGCGGCCAATCAGGAGTGCGTTC - -a score=0.000000 -s NM_144704 100 100 - 100 aggcgcgggcggggcgtgtctggcgctgcgtttgcactgcggccggggagcccgcgggcccagcaccgccccgccgggccggagcaggtggggggcggcc -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_006767 100 100 - 100 CCATCCCGGGTCCACGCCGGATCGGCCGC---GCTGTAAGCCCAACTTGCGGCCACCGCCCCGGGCCGGCTGGAGAAACCACATTTCCCGGCGAGCCCTGCGC -s mm3 0 0 - 0 ....................................................................................................... -s rn3 98 98 - 98 CCATCCCTGGTTCAGGCCGAATAGGCCACCAGGTTGCAGG----ACTCACGGCCACCGCCC-GGGCCAAGTCAAAGGACCACACTTCCCAGAGGGCCCTGCGC - -a score=0.000000 -s NM_030573 100 100 - 100 CTCTGGCCATTGCTGCGCCGCCGAAGTCTCGCGAGGGGTAGCGCGCGCCGGAAGTTGGTACCATAGAGACTGGAGAGCCGGAGGTgcccccgccaccggg -s mm3 0 0 - 0 .................................................................................................... -s rn3 100 100 - 100 GTCTTGCCATTGCTGCGCCGCCAAAATCTCGCGATGGGTGGGTCAATGCGGAAGTTGGTAGCAGAGAGACTCCGACGCCCGTGGCGCCGGCCCCCAAGGG - -a score=0.000000 -s NM_178315 100 100 - 100 AACCCAGCTAGCTAGGACCTcgccccgccccgccccggtggcgggggcACCTCCGGCTCTCCAGTCTCTATGGTACCAACTTCCGGCGCGCGCTACCCCT -s mm3 0 0 - 0 .................................................................................................... -s rn3 100 100 - 100 GGCCCGCCCCGCCAGGATCTCTTCCGGTCCCGCCCCTTGGGGGCCGGCGCCACGGGCGTCGGAGTCTCTCTGCTACCAACTTCCGCATTGACCCACCCAT - -a score=0.000000 -s NM_145042 100 100 - 100 ACGTCCACAGGCCGCCGTCGCCTCTTCCTCCTGCTTTTTATCCTCCCCAGACCTCTGGCAGGAACCGCTCATCGTTACGCCCCTTTCGCAGCCTCAGACC -s mm3 0 0 - 0 .................................................................................................... -s rn3 97 97 - 97 AGGCCCAGTGGCCGC---AGCTTCTCCCTCTTGATCTTCATTCTTCTGAACCTCCTTGCAGGGACCCTTCATGTTTACTCTCACTACCCAGTCAGGGACG - -a score=0.000000 -s NM_005446 100 100 - 100 CTGCAGCCGCAGCTGAACAGGAGGCAAAGCAGGGCCCGAGCCAGGCCAGGCCAGTTGCTGTTAAAGGGACACTTCCACTAAAGCAGGATCCAGATCCAGC -s mm3 0 0 - 0 .................................................................................................... -s rn3 88 88 - 88 CTTCAGCCACGGCTGTACTGGACGT---GCATGG---GATTCAGGCCAG------TGTCGTTAAAGGGACATCTCGAATTCAGTAGGATCTGGCTCCTGC - -a score=0.000000 -s NM_004173 100 100 - 100 TCCGCTCTGAGCACTGAGCCCGCCCAGTTCGC---CGGCGCC-GAGCGCAGGGCCCGCCCCCATC--CCAGGCCC--------CCCGCGCGGCCCCACCCGCTGC----------------------------CACACACCC -s mm3 0 0 - 0 .............................................................................................................................................. -s rn3 139 139 - 139 ACCG---TGCGCACTGCGCCTGCCCCGCTAGTTTACAACGCCTGCGTGCAGGGCCCGCCCCTCGCTGCCAAGCGCCGGATAAACCCGAGCCTCACAACTCGCATCCCTTGTGGAGTTCTGTACAGGGACTGAGCACCGAATC - -a score=0.000000 -s NM_015094 100 100 - 100 agccgcccgcccAGCGCCATCTTGGAAGCTTGTGACGTCGGCGCCGCCCGCTCACCCCTGACCCACATCTGAATgggcgagcggcggggcggggacaggg -s mm3 0 0 - 0 .................................................................................................... -s rn3 92 92 - 92 AGCCGCCCGCTCCGCGCCATCTTGGAAGCTTGTGACGTCAGCTCCACCCGCTCACCCCTGACCCACATCTGAATGGGCGAGCGACGGGGCGG-------- - -a score=0.000000 -s NM_003347 100 100 - 100 GCTCCTTCCCCAGAATGCATCGCGGCCGGCCGGGCGGCTGGAGCCCCCGCACTTCCTGGAGCGGGGGAGGGGCC-GCGGGGCGGGGCACAGGAGCAGAGCG -s mm3 0 0 - 0 ..................................................................................................... -s rn3 100 100 - 100 GCTGCTTTCCCAAAATGCATCGCGGTAGGCCAGTCGGCTTGAACCCCCTCACTTCCTGGAGAGGGGGAGGGGCTAACAGGGAAGAGCGC-GGAATAGAGAA - -a score=0.000000 -s NM_152612 100 100 - 100 TACAGTCTGCGCCCTCACTGGAGCAGCTGCACAGTGCGAGGAAGTCGG---CTGGCGGCCTCC--ACTTGCTTATTTGCATACCACATCCTCATTGGTTCTTACC -s mm3 0 0 - 0 ......................................................................................................... -s rn3 105 105 - 105 CTCATTCAGCACCCTTTAAAGCTCTACCGCACAGTGCACTGGAATCCTACCCTCGCAGCCTCCCAGGATGCTCATTTACATACCTCATCCTGATTGGCCAGAATC - -a score=0.000000 -s NM_022044 100 100 - 100 CCCTCGGGCCCAGGGGCCGCTTCCGTCCCCGCCGCGGCCCAATCCGGTTCTGACAGCGCCCGCTTGCGGCAGCCAATAGTCGGCCCGCGCGGCACTCCGC -s mm3 0 0 - 0 .................................................................................................... -s rn3 97 97 - 97 TGCTTTGGACCTCGG--CGCTTCCGTCCTCAACAGCAGCCAATCCGGCGTTGACAGCGCCCTCCCTCGGCAGCCAATCGTCTGCGCGCGC-GCGTTCCTC - -a score=0.000000 -s NM_014337 100 100 - 100 AACGGGCGCCTGGCGTGCTGGGAATTGTGGTTCGCTAGCGCCAGGTGCTCATGCTcggaaggatcgcctgcccagtatggggtcctagctaggtgtgcca -s mm3 0 0 - 0 .................................................................................................... -s rn3 55 55 - 55 AGTTAGAATTGGGCATTCTGGGAATTGTGGTTTCCAGGTTCCTAGGGTACATGCT............................................. - -a score=0.000000 -s NM_148176 100 100 - 100 GTGACCACTTCCGGGTTCCGCGGCGC---GCCCCGGAAACGGGCGCCTGGCGTGCTGGGAATTGTGGTTCGCTAGCGCCAGGTGCTCATGCTcggaaggatcg -s mm3 0 0 - 0 ....................................................................................................... -s rn3 92 92 - 92 TCAACTACTTCCGGAATTCGACGCGCCAGGCACCGGAAGTTAGAATTGGGCATTCTGGGAATTGTGGTTTCCAGGTTCCTAGGGTACATGCT........... - -a score=0.000000 -s NM_148175 100 100 - 100 CGTGACCACTTCCGGGTTCCGCGGCGC---GCCCCGGAAACGGGCGCCTGGCGTGCTGGGAATTGTGGTTCGCTAGCGCCAGGTGCTCATGCTcggaaggatc -s mm3 0 0 - 0 ....................................................................................................... -s rn3 93 93 - 93 CTCAACTACTTCCGGAATTCGACGCGCCAGGCACCGGAAGTTAGAATTGGGCATTCTGGGAATTGTGGTTTCCAGGTTCCTAGGGTACATGCT.......... - -a score=0.000000 -s NM_013313 100 100 - 100 GAAAATGCACGCAAGAGCCGTCGTTGTCCAGGAGGGCGTGTGGCACTGTCCACACAGCTGGGACGAGAGAAA---AACGTAACCTGCCAACCAATCAGACAAA -s mm3 0 0 - 0 ....................................................................................................... -s rn3 102 102 - 102 AAAAGCATGCGCAAGAGCCGTTGCTGGTCAGGAGGGCGTGTGGTGCGGTCCACACA-CTGGGACAAGAGAAAGCCAGTGCAACCTGCAAGCAAATCAGACAGA - -a score=0.000000 -s NM_002745 100 100 - 100 gcgcgccgaggagggtgccggggcggggacAAGAAGTGTGCATGCGGATTGGTTCCTCGCGGC--TgggggcggggccgcgcgggccggcggAAGCGGCGGG -s mm3 0 0 - 0 ...................................................................................................... -s rn3 99 99 - 99 TCGCGTCGAG--GGGCGCTAGGGCGGAGTCAAG-GGCGTGCGTGATGATTGGCTTCTCCCCTCAGAGAGGGCGGAGTCTCGCGGGCCGGCGGAAGCAGCGAA - -a score=0.000000 -s NM_138957 100 100 - 100 gcgcgccgaggagggtgccggggcggggacAAGAAGTGTGCATGCGGATTGGTTCCTCGCGGC--TgggggcggggccgcgcgggccggcggAAGCGGCGGG -s mm3 0 0 - 0 ...................................................................................................... -s rn3 99 99 - 99 TCGCGTCGAG--GGGCGCTAGGGCGGAGTCAAG-GGCGTGCGTGATGATTGGCTTCTCCCCTCAGAGAGGGCGGAGTCTCGCGGGCCGGCGGAAGCAGCGAA - -a score=0.000000 -s NM_025056 100 100 - 100 ggctgtgtaaatgatcttca--------------gcttttgaaaacacgctcaaactcactctgtaacagaaaagcaaacttaa-caat-------tgccc-caagac----------------------------aggcttcttacctga -s mm3 0 0 - 0 ....................................................................................................................................................... -s rn3 136 136 - 136 TTTCGGGCATGAAGCCTTCACAAGCCTGGGGTAGGTTTTT---------------CCCACAGTGCAGCCGCAAGTCACCCGTAAACAATCCTGGTTTGTCCGCTAGACTTGGTGGACTGACTCTGGTCTGCCACTGATGCTTTTTATCTGA - -a score=0.000000 -s NM_014634 100 100 - 100 GCTGCCGGCCGGCCCCGCCCACTTCCCGTCCCTggccgccgcgggcgccgcgggcgccgcgcAGGCGCAGTCGGGCCTCCAGGCTGGCGGGGCCGGACCT -s mm3 0 0 - 0 .................................................................................................... -s rn3 79 79 - 79 GCTTTGGGCCAACCCCGCCTACTTCCCGTCC----------TGGGCGCCGCAGGCTCCGCGCAAGCGCAGTCGGACCTC-----------GGGCGCGCCT - -a score=0.000000 -s NM_003935 100 100 - 100 AGCTCCGGTCCTTGTTCCCGGGGCGGCTACCGACAACCCCTATTTCCGGGTCCAGCCGCTTCTGGCGTCCCCGCGTCCGGTGTGCCAGCGTCTGCCCTCC -s mm3 0 0 - 0 .................................................................................................... -s rn3 83 83 - 83 CGCTCCGG-CCGTGCTTTCCCGGTGGCCACTCACGAACGC-ACTTCCGGCTCTGTCCGCTTGTGGCGTCCC---------------CTCATCTGCTCTCC - -a score=0.000000 -s NM_007128 100 100 - 100 CTGTGGCCACGGTGCCTGGGGTCCCCAAGGGCTGGCCCAGCATCCTCCTCCCTGCTCTGAGAGGTGGGGCCGTGGCACACCCCGTTCCTGGCCACTACCA -s mm3 0 0 - 0 .................................................................................................... -s rn3 82 82 - 82 CTACAGCCACTGCTCC-GGTGCCCTGACCAGCTGG-GAAGCAGTCTCGCCCCTGCTTT----------------GCACCCGGGGTTCCTGCTCACCACCC - -a score=0.000000 -s NM_080764 100 100 - 100 ctcaggtgtggtccctttgttgactatccatgcttaagggattgtgaggaaacaactgaacctaacatctgtcctcttctagttacatctggggccagtt -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_006115 100 100 - 100 ctcgccggaactcgcgtctggggccagcagggggcactagagtcaacagggactgtatgcaaaacccacttcctcccaggccctctagggggatggtcag -s mm3 0 0 - 0 .................................................................................................... -s rn3 0 0 - 0 .................................................................................................... - -a score=0.000000 -s NM_002073 100 100 - 100 TGGCAGCAGCGGG-------CCCAGACAAGGAGCACGGGATGGGGCACCTCTCCCTCTTGCCACA----------------GGGGACACTGAGA-----------------CCAGGCAGACAAGAGC-CCAGCTGCCCTGG -s mm3 0 0 - 0 ............................................................................................................................................. -s rn3 140 140 - 140 CGGCAGCAGCAGACGTCCCCCCTGGATGCGGGACACAGGAT-GGGTGCCTCTCCCCCTTGCCAAACAGAATGGTCCCAAGGAGGGATGCTGAAATGTGGGCTGGTATGACGCCGGGCAGATGAGAGAGGCAGCTGACCCGG - -a score=0.000000 -s NM_014433 100 100 - 100 GCGGTCGACATAATCAGCACCCACTGCGCAGGCGCAAACAGCCCAAGGCTGCGGCCGGCTGCAAAGCGGGAACAATCA----TTTACAGGGTTGCTGTGGAGAC -s mm3 0 0 - 0 ........................................................................................................ -s rn3 104 104 - 104 CTGGTCAATACCCTAGGGAGCCAAGGCGCAGGCGCAAAACCGCTAGGGCTAAGCCCCGCGGAGAAGGAAAAAACAACATTATTTTACAATGTTACCATGTAGAA - -a score=0.000000 -s NM_004914 100 100 - 100 CAGAGAGACTCCTGGACACC-CTGGAGAGCCG-GAGATCACCATGACAACAAGGGCGGTGCTGGATGGGTGGGCGGTGGGCGGGGCTATGGAGGCCCGGGGG -s mm3 0 0 - 0 ...................................................................................................... -s rn3 82 82 - 82 CTCAGAGACTTCCGGACTCCACTGCAGCGCCCCGGGCTCACCATGACAACCAAGGCGTTG----ATGAGCAGGCGG----------------GGCCCGTGCG - -a score=0.000000 -s NM_021574 100 100 - 100 GTCCCTGTGCCTTTTGGGAAACTGAGGCCCTAACAACAGCGAATTGGACTGTGCAACTCGCAG-CCCAGGGGTCCCCCGTAAAAAAGACACCGGACTCCCT -s mm3 0 0 - 0 ..................................................................................................... -s rn3 74 74 - 74 GTCCTTG-------------AATACGACCCGGACCACTGCAAACTGGTCTGATCCCCTTCTGGACACAGAGGTGCC--------------CCAGACCCGGT - -a score=0.000000 -s NM_004327 100 100 - 100 TGCGCCGCAGGAAGGGGAGGGCCGGGGGGAGGTGGCCGCGGCGCGGATGACGGAGCCAGGCGGGCCTCTTAAAGGGGCCGCGCCGTGGGCACAGGGCGGG -s mm3 0 0 - 0 .................................................................................................... -s rn3 94 94 - 94 AGCGCTGCAGGAAGGGGAGGACCGGGGGGCGGTGGCCGCGGAGCGGCTGACGGGGCTGGGCGCGCCTCTTAAAGGGGCCGCGCCGCGGGAAGAG------ - -a score=0.000000 -s NM_152509 100 100 - 100 ATGGAATCAGGTGGTTTGACACTCGAGGAATCCGCCCAGTTCCCCTgggccggccagggcgggccgggggcggacccgggctgggcctcgcggtgggcgg -s mm3 0 0 - 0 .................................................................................................... -s rn3 91 91 - 91 ATGGGATCATGTGGTTTGACG--CGCGGAATCCGCCCGGTCTCCCC--GCCGGCCCGGGCGGGGCGGGG-----CCGGGGCGGGGCCTGGCGCCGGGCGG - -a score=0.000000 -s NM_020070 100 100 - 100 CCATCCTCA----TCCTCTGGTCCCTGCCCCCAGCCAGGCCCCTTCCAGAGTCCATGACCGTTACCCCTGGGGTTCTGTCCCAGAGGCACATCTGCCAACTGCC -s mm3 0 0 - 0 ........................................................................................................ -s rn3 102 102 - 102 AAA-CCGCAGGTTGTCTCTGGTTTCCACCACCAG-CAGGCATACCCCAGTGCCTATGGTCACCATCTGTGGAGGTCTCTCCCAAAGGGACATCTGCAAACTACC - -a score=0.000000 -s NM_152855 100 100 - 100 CCATCCTCA----TCCTCTGGTCCCTGCCCCCAGCCAGGCCCCTTCCAGAGTCCATGACCGTTACCCCTGGGGTTCTGTCCCAGAGGCACATCTGCCAACTGCC -s mm3 0 0 - 0 ........................................................................................................ -s rn3 102 102 - 102 AAA-CCGCAGGTTGTCTCTGGTTTCCACCACCAG-CAGGCATACCCCAGTGCCTATGGTCACCATCTGTGGAGGTCTCTCCCAAAGGGACATCTGCAAACTACC - -a score=0.000000 -s NM_016449 100 100 - 100 TCCACTGCGAGCTACTGACTGAGGGCTGCTGGCCCTGGCTGATGCTTATAACCCACAAAGC-TTCCTATGTCACCTGGTTACCAGGAAACAGCCAGGTCAG -s mm3 0 0 - 0 ..................................................................................................... -s rn3 95 95 - 95 TCCGTCGCCGCCTCCGGACTGAAGGCCGCTAGCC--GGCTCCTGCC----AACCGGAACGCGCTCCGCGGTCACCTGGTGACGGGTAGCCAATCAGACCTG - -a score=0.000000 -s NM_153615 100 100 - 100 GTTAGAAAGGCTGGAACCAGGGACTCCCAACAGCTTCTCCCCAGTGCCGGGCTGGAAAGTTAGCATCCTGCAGAT---------------------CTCATTTTCATACTAGGGGGACAAG -s mm3 0 0 - 0 ......................................................................................................................... -s rn3 120 120 - 120 CCCTGGAAGGCAGGCACCAGGTG-TTCCACCAGCTTCTCCAGAGTACCGGCCTTCACCGTGCGCACCTTGCAAGTCTCGTAGAGGTTCAGAGCTGACTCATTCTCGCACTGGGGGAGCAAG - -a score=0.000000 -s NM_021916 100 100 - 100 TCCACAGCAGCTGCTGACGCGGAGCCCGCGGCCGCCCGAGCACCCAGAgccccgcccccggcccgcgggcACTTCCGGGACCACTCTAGGCCGCGCGGAG -s mm3 0 0 - 0 .................................................................................................... -s rn3 90 90 - 90 TGTCCCCCACCCTTCGAC------CCAGTACCACCCCCAGCAACC----TCCCCTCCCCCATCCGCAGGCACTTCCGGGACCACTCTAGGCCTCACGGAG - -a score=0.000000 -s NM_181436 100 100 - 100 TCCACAGCAGCTGCTGACGCGGAGCCCGCGGCCGCCCGAGCACCCAGAgccccgcccccggcccgcgggcACTTCCGGGACCACTCTAGGCCGCGCGGAG -s mm3 0 0 - 0 .................................................................................................... -s rn3 90 90 - 90 TGTCCCCCACCCTTCGAC------CCAGTACCACCCCCAGCAACC----TCCCCTCCCCCATCCGCAGGCACTTCCGGGACCACTCTAGGCCTCACGGAG -