d41531259de6cb8aafd3b0d336518f2e8d6cfb61
markd
  Tue May 26 17:13:04 2020 -0700
Hiram is right, this is useless; what is really needed is for mafOrder to have an option to orient the reference sequence to the positive strand

diff --git src/hg/ratStuff/makefile src/hg/ratStuff/makefile
index af53ecf..11dfa90 100644
--- src/hg/ratStuff/makefile
+++ src/hg/ratStuff/makefile
@@ -1,44 +1,43 @@
 kentSrc = ../..
 
 include ${kentSrc}/inc/localEnvironment.mk
 
 # List of directories to build for userApps
 UTILS_APPLIST = \
 	mafAddIRows \
 	mafAddQRows \
 	mafFilter \
 	mafFrag \
 	mafFrags \
 	mafGene \
 	mafMeFirst \
 	mafSpeciesList \
 	mafSpeciesSubset \
 	mafSplit \
 	mafSplitPos \
 	mafsInRegion \
 	mafOrder
 
 # List of directories to build at UCSC
 DIRS = \
-	mafRc \
 	stageMultiz
 
 # List of directories to build
 USE_DIRS = $(DIRS) $(UTILS_APPLIST)
 
 # Build all directories
 all: ${USE_DIRS:%=%.all}
 %.all:
 	cd $* && echo $* && ${MAKE}
 
 test: ${USE_DIRS:%=%.test}
 %.test:
 	cd $* && echo $* && ${MAKE} test
 
 userApps: $(UTILS_APPLIST:%=%.userApp)
 %.userApp:
 	cd $* && echo $* && $(MAKE)
 
 clean: $(USE_DIRS:%=%.clean)
 %.clean:
 	cd $* && echo $* && $(MAKE) clean