7beda309214a84ca208bb6b63178978f906698df
max
  Wed May 27 03:49:16 2020 -0700
OMIM otto update for new OMIM phenotype table, refs #18419

diff --git src/hg/utils/otto/omim/makefile src/hg/utils/otto/omim/makefile
index ea1c14f..e51c228 100644
--- src/hg/utils/otto/omim/makefile
+++ src/hg/utils/otto/omim/makefile
@@ -1,26 +1,27 @@
 SUBDIRS = doOmimGene2 doOmimGeneSymbols doOmimLocation
 
 all: ${SUBDIRS:%=%.suball}
 
 %.suball:
 	${MAKE} -C $* all
 
 # any changes must be committed (and this is checked).
 install: check-prefix installSub
-	cp omimWrapper.sh omim.tables checkOmim.sh validateOmim.sh parseGeneMap.pl omimUploadWrapper.sh checkOmimUpload.sh doOmimPhenotype.pl buildOmimTracks.sh flagOmimGene.py ${PREFIX}
+	cp omimWrapper.sh omim.tables checkOmim.sh validateOmim.sh parseGeneMap.pl omimUploadWrapper.sh checkOmimUpload.sh doOmimPhenotypeNew buildOmimTracks.sh flagOmimGene.py ${PREFIX}
+	#cp ../../../lib/{omimGeneMap,omimGeneMap2,omim2gene,omimGeneSymbol,omimPhenotype,omimAv}.sql /hive/data/outside/otto/omim/sql/
 
 installSub: ${SUBDIRS:%=%.install}
 
 %.install:
 	${MAKE} -C $* install
 
 make-prefix: check-prefix
 	mkdir -p ${PREFIX}
 
 check-prefix:
 	@test -n "${PREFIX}" || (echo "must specify PREFIX= to install"; exit 1)
 
 clean:
 	rm -f doOmimGene2/doOmimGene2
 	rm -f doOmimGeneSymbols/doOmimGeneSymbols
 	rm -f doOmimLocation/doOmimLocation