d8291eebd92ce15d5ca00bdf8c7db1e36d7425b0 abenetpa Wed May 13 18:27:08 2020 -0700 change track names and add html pages refs #25424 diff --git src/hg/makeDb/trackDb/human/trackDb.dbVar.ra src/hg/makeDb/trackDb/human/trackDb.dbVar.ra index 6856bac..c828e02 100644 --- src/hg/makeDb/trackDb/human/trackDb.dbVar.ra +++ src/hg/makeDb/trackDb/human/trackDb.dbVar.ra @@ -1,110 +1,111 @@ track dbVarSv superTrack on group varRep -html dbVar_common -shortLabel NCBI Curated Structural Variants +html dbVarCurated +shortLabel dbVar Curated Structural Variants longLabel NCBI Curated Structural Variants from dbVar track dbVar_common superTrack dbVarSv pack group varRep compositeTrack on visibility pack itemRgb on type bigBed 9 + . - shortLabel NCBI Common SV - longLabel NCBI Curated Common Structural Variants + html dbVarCommon + shortLabel dbVar Common SV + longLabel NCBI dbVar Curated Common Structural Variants mouseOverField label searchIndex name - filterLabel.type Items in Type Field + filterLabel.type Variant Type filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion - filterLabel.length Items in Length Field + filterLabel.length Variant Size filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB release alpha track dbVar_common_gnomad parent dbVar_common on - shortLabel NCBI Curated gnomAD SVs - longLabel NCBI Curated Common SVs: all populations from gnomAD + shortLabel dbVar Curated gnomAD SVs + longLabel NCBI dbVar Curated Common SVs: all populations from gnomAD bigDataUrl /gbdb/$D/bbi/dbVar/common_gnomad.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: release alpha track dbVar_common_1000g parent dbVar_common on - shortLabel NCBI Curated 1000 Genomes SVs - longLabel NCBI Curated Common SVs: all populations from 1000 Genomes + shortLabel dbVar Curated 1000 Genomes SVs + longLabel NCBI dbVar Curated Common SVs: all populations from 1000 Genomes bigDataUrl /gbdb/$D/bbi/dbVar/common_1000g.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: release alpha track dbVar_common_decipher parent dbVar_common on - shortLabel NCBI Curated DECIPHER SVs - longLabel NCBI Curated Common SVs: all populations from DECIPHER + shortLabel dbVar Curated DECIPHER SVs + longLabel NCBI dbVar Curated Common SVs: all populations from DECIPHER bigDataUrl /gbdb/$D/bbi/dbVar/common_decipher.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: release alpha track dbVar_common_african parent dbVar_common on - shortLabel NCBI Curated African SVs - longLabel NCBI Curated Common SVs: African + shortLabel dbVar Curated African SVs + longLabel NCBI dbVar Curated Common SVs: African bigDataUrl /gbdb/$D/bbi/dbVar/common_african.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: release alpha track dbVar_common_european parent dbVar_common on - shortLabel NCBI Curated European SVs - longLabel NCBI Curated Common SVs: European + shortLabel dbVar Curated European SVs + longLabel NCBI dbVar Curated Common SVs: European bigDataUrl /gbdb/$D/bbi/dbVar/common_european.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: release alpha track dbVar_common_global parent dbVar_common on - shortLabel NCBI Curated All Populations - longLabel NCBI Curated Common SVs: all populations + shortLabel dbVar Curated All Populations + longLabel NCBI dbVar Curated Common SVs: all populations bigDataUrl /gbdb/$D/bbi/dbVar/common_global.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: release alpha track dbVar_conflict superTrack dbVarSv pack compositeTrack on visibility pack itemRgb on type bigBed 9 + . - shortLabel NCBI Conflict SV - longLabel NCBI Curated Conflict Variants + html dbVarConflict + shortLabel dbVar Conflict SV + longLabel NCBI dbVar Curated Conflict Variants mouseOverField label searchIndex name - html conflict.html - filterLabel.overlap Items in Overlap Field + filterLabel.overlap Variant Overlap filterValues.overlap 10 to 25,25 to 50,50 to 75,75 to 90,90 to 100 - filterLabel.type Items in Type Field + filterLabel.type Variant Type filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion - filterLabel.length Items in Length Field + filterLabel.length Variant Length filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB track dbVar_conflict_pathogenic parent dbVar_conflict on - shortLabel NCBI Curated Conflict SVs - longLabel NCBI Curated Common SVs: Conflicts with Pathogenic + shortLabel dbVar Curated Conflict SVs + longLabel NCBI dbVar Curated Common SVs: Conflicts with Pathogenic bigDataUrl /gbdb/$D/bbi/dbVar/conflict_pathogenic.bb type bigBed 9 + . url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI Variant Page: