b438269cad04b002a7f51302ff76b12bcf76dfbc dschmelt Wed May 13 14:39:45 2020 -0700 Fixing incorrect assembly ref No RM diff --git src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html index 1901417..d0f4d98 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html +++ src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html @@ -98,36 +98,36 @@ To examine or download that file, you can click <a href="examples/hubExamples/hubSearchable/in.txt"> here</a>. Note that the first word is the key referenced in the BED file and the following search terms are associated aliases will be searchable to the location of the key. These search terms are case insensitive and allow partial word searches.</p> <p> Finally you will make the index file (.ix) and the index of that index (.ixx) which helps the search run quickly even in large files.</p> <pre><code>ixIxx input.txt out.ix out.ixx</code></pre> <h3>STEP 4: View and Search</h3> <p> Enter the URL to your hub on the My Hubs tab of the <a href="../../cgi-bin/hgHubConnect#unlistedHubs">Track Data Hubs</a> page. Alternately, you can enter your hub.txt URL in the following web address:</p> -<pre><code>genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=<strong>YourUrlHere</strong></code></pre> +<pre><code>genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hubUrl=<strong>YourUrlHere</strong></code></pre> <p> If you would like to look at an already-made example, click the following link which includes <code>hideTracks=1</code> to hide other tracks. After the link is a picture of what the hub should look like:</p> -<pre><code><a href="../../cgi-bin/hgTracks?db=hg19&hideTracks=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubSearchable/hub.txt">https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hideTracks=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubSearchable/hub.txt</a></code></pre> +<pre><code><a href="../../cgi-bin/hgTracks?db=hg38&hideTracks=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubSearchable/hub.txt">https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hideTracks=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubSearchable/hub.txt</a></code></pre> <p class='text-center'> <img class='text-center' src="../../images/defaultViewSearchTracks.png" alt="A display of the Searchable hub track" width="1000" height="70"> </p> <p>Once your hub displays, you should be able to type in a gene symbol or Enst ID and scroll down the results page until you see your search results.</p> <p class='text-center'> <img class='text-center' src="../../images/searchingFAM87b.png" alt="Typing a search term in the search box" width="1000" height="70"> <p class='gbsCaption text-center'>You can type your search term (fam87b) in the box above the ideogram and press <button>go</button>. Note that it is not case sensitive. Scrolling to the bottom of the search results page, you will see your searchable hub keyword that was linked