a0ea77a19c81a4c1d0929d6f97994e1843309adb max Mon May 18 08:06:53 2020 -0700 fixing Orf1ab to ORF1ab, refs #25114 diff --git src/utils/genbankToBigGenePred src/utils/genbankToBigGenePred index 100fee7..93f11d4 100755 --- src/utils/genbankToBigGenePred +++ src/utils/genbankToBigGenePred @@ -42,31 +42,31 @@ if ft.strand==-1: strand = "-" elif ft.strand==0: strand = "." start = ft.location.start end = ft.location.end size = ft.location.end-ft.location.start geneList = ft.qualifiers.get("gene") geneId = "" if geneList and len(geneList)==1: geneId = geneList[0] # requested by Jason Fernandes, email Apr 29, 2020, 9:34 PM if chromName=="NC_045512v2" and start==265 and end==13483: - geneId = "Orf1a" + geneId = "ORF1a" prodList = ft.qualifiers.get("product") prod = "" if prodList and len(prodList)==1: prod = prodList[0] if nameField=="product" and prod in doneProducts: return doneProducts.add(prod) # set the BED name field if nameField=="gene": name = geneId elif nameField=="product":