1bd2b1f3f86df6284bc45e1075fe011d215d1d78 abenetpa Thu May 21 09:19:55 2020 -0700 correct typos as in refs #25424 diff --git src/hg/makeDb/trackDb/human/dbVarCommon.html src/hg/makeDb/trackDb/human/dbVarCommon.html index d2f88c4..a386a35 100644 --- src/hg/makeDb/trackDb/human/dbVarCommon.html +++ src/hg/makeDb/trackDb/human/dbVarCommon.html @@ -49,44 +49,44 @@ <a href="https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd186">Variants</a> with AF >= 0.01 from 1000 Genomes Consortium Phase 3 Integrated SV.</li> <li><b>NCBI Curated Common SVs: all populations from DECIPHER -</b> <a href="https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd186">Variants</a> with AF >= 0.01 from DECIPHER Consensus CNVs.</li> </ul> </p> <h2>Display Conventions and Configuration</h2> Items in all subtracks follow the same conventions: items are shaded according to variant type. <b><font color="red">Red</font></b> for copy number loss or deletion, <b><font color="blue">blue</font></b> for copy number gain or duplication and <b><font color="#662180">violet</font></b> for copy number variation. Mouseover on items indicates Allele Frequencies (AF). All tracks can be filtered according to the Variant Size and Variant Type. -<h2>Data Acces</h2> +<h2>Data Access</h2> The raw data can be explored interactively with the <a href="https://genome.ucsc.edu/cgi-bin/hgTables">Table Browser</a>, or the <a href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a>. For automated analysis, the data may be queried from our <a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>. The data can also be found directly from the dbVar nstd186 <a target=_blank href="https://www.ncbi.nlm.nih.gov/dbvar/content/common_summary/#data_access">data access</a>. For questions about dbVar track data, please contact <em>dbvar@ncbi.nlm.nih.gov</em>. </p> <h2>Credits</h2> <p> Thanks to the dbVAR team at NCBI, especially Timothy Hefferon for technical coordination and -consultation, and to Christopher Lee, Anna Benet-Pages, and Maximilian Haeussler of the Genom -Browser team for engineering the track display. +consultation, and to Christopher Lee, Anna Benet-Pages, and Maximilian Haeussler +of the Genome Browser team for engineering the track display. </p> <h2>References</h2> <p> Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M, Zhou G <em>et al</em>. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gks1213" target="_blank"> DbVar and DGVa: public archives for genomic structural variation</a>. <em>Nucleic Acids Res</em>. 2013 Jan;41(Database issue):D936-41. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/23193291" target="_blank">23193291</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531204/" target="_blank">PMC3531204</a> </p>