7ae9d0e1bf12e39fc643f806d3251b6e3dca809a chmalee Thu May 21 16:54:10 2020 -0700 Fixing error in size filter for clinGenCnv track, thanks Dan diff --git src/hg/makeDb/trackDb/human/trackDb.clinGen.ra src/hg/makeDb/trackDb/human/trackDb.clinGen.ra index 4aa601b..fa8f8a5 100644 --- src/hg/makeDb/trackDb/human/trackDb.clinGen.ra +++ src/hg/makeDb/trackDb/human/trackDb.clinGen.ra @@ -1,56 +1,55 @@ track clinGenSuper shortLabel ClinGen longLabel Clinical Genome Resource group phenDis superTrack on track dosageSensitivity parent clinGenSuper on shortLabel ClinGen Dosage Sensitivity longLabel Clinical Genome Resource Dosage Sensitivity visibility pack type bigBed 9 + itemRgb on compositeTrack on track clinGenHaplo parent dosageSensitivity shortLabel ClinGen Haplo Insufficiency longLabel ClinGen Haplo Insufficiency visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/clinGen/clinGenHaplo.bb mouseOverField _mouseOver filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely filterLabel.haploScore Haplosensitivity Score track clinGenTriplo parent dosageSensitivity shortLabel ClinGen Triplo Sensitivity longLabel ClinGen Triplo Sensitivity visibility dense type bigBed 9 + bigDataUrl /gbdb//$D/bbi/clinGen/clinGenTriplo.bb mouseOverField _mouseOver filterValues.triploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely filterLabel.triploScore Triplosensitivity Score track clinGenCnv parent clinGenSuper off shortLabel ClinGen Copy Number Variants longLabel Clinical Genome Resource Copy Number Variants type bigBed 9 + itemRgb on visibility dense mergeSpannedItems off bigDataUrl /gbdb/$D/bbi/clinGen/clinGenCnv.bb mouseOverField _mouseOver - filter.size filterLabel.size Variant Size filterValues.variantType copy_number_loss|loss,copy_number_gain|gain filterLabel.variantType Copy Number Type (gain or loss) filterValues.clinicalInterpretation Pathogenic|pathogenic,Benign|benign filterLabel.clinicalInterpretation Benign or Pathogenic url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI DbVar: urls pubMed="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" clinGenId="https://dosage.clinicalgenome.org/clingen_region.cgi?id=$$&page=print"