95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeToPdb.h src/hg/inc/gencodeToPdb.h
new file mode 100644
index 0000000..e9cce52
--- /dev/null
+++ src/hg/inc/gencodeToPdb.h
@@ -0,0 +1,64 @@
+/* gencodeToPdb.h was originally generated by the autoSql program, which also 
+ * generated gencodeToPdb.c and gencodeToPdb.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETOPDB_H
+#define GENCODETOPDB_H
+
+#define GENCODETOPDB_NUM_COLS 2
+
+extern char *gencodeToPdbCommaSepFieldNames;
+
+struct gencodeToPdb
+/* GENCODE transcript to Protein Data Bank (PDB) protein structure mapping */
+    {
+    struct gencodeToPdb *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *pdbId;	/* Protein Data Bank (PDB) identifier */
+    };
+
+void gencodeToPdbStaticLoad(char **row, struct gencodeToPdb *ret);
+/* Load a row from gencodeToPdb table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeToPdb *gencodeToPdbLoad(char **row);
+/* Load a gencodeToPdb from row fetched with select * from gencodeToPdb
+ * from database.  Dispose of this with gencodeToPdbFree(). */
+
+struct gencodeToPdb *gencodeToPdbLoadAll(char *fileName);
+/* Load all gencodeToPdb from whitespace-separated file.
+ * Dispose of this with gencodeToPdbFreeList(). */
+
+struct gencodeToPdb *gencodeToPdbLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeToPdb from chopper separated file.
+ * Dispose of this with gencodeToPdbFreeList(). */
+
+#define gencodeToPdbLoadAllByTab(a) gencodeToPdbLoadAllByChar(a, '\t');
+/* Load all gencodeToPdb from tab separated file.
+ * Dispose of this with gencodeToPdbFreeList(). */
+
+struct gencodeToPdb *gencodeToPdbCommaIn(char **pS, struct gencodeToPdb *ret);
+/* Create a gencodeToPdb out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeToPdb */
+
+void gencodeToPdbFree(struct gencodeToPdb **pEl);
+/* Free a single dynamically allocated gencodeToPdb such as created
+ * with gencodeToPdbLoad(). */
+
+void gencodeToPdbFreeList(struct gencodeToPdb **pList);
+/* Free a list of dynamically allocated gencodeToPdb's */
+
+void gencodeToPdbOutput(struct gencodeToPdb *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeToPdb.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeToPdbTabOut(el,f) gencodeToPdbOutput(el,f,'\t','\n');
+/* Print out gencodeToPdb as a line in a tab-separated file. */
+
+#define gencodeToPdbCommaOut(el,f) gencodeToPdbOutput(el,f,',',',');
+/* Print out gencodeToPdb as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETOPDB_H */
+