95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeToPubMed.h src/hg/inc/gencodeToPubMed.h
new file mode 100644
index 0000000..d736896
--- /dev/null
+++ src/hg/inc/gencodeToPubMed.h
@@ -0,0 +1,64 @@
+/* gencodeToPubMed.h was originally generated by the autoSql program, which also 
+ * generated gencodeToPubMed.c and gencodeToPubMed.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETOPUBMED_H
+#define GENCODETOPUBMED_H
+
+#define GENCODETOPUBMED_NUM_COLS 2
+
+extern char *gencodeToPubMedCommaSepFieldNames;
+
+struct gencodeToPubMed
+/* Gencode metadata table of PubMed identifier of published experimental data associated with Gencode Genes */
+    {
+    struct gencodeToPubMed *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    int pubMedId;	/* PubMed identifier of supporting literature */
+    };
+
+void gencodeToPubMedStaticLoad(char **row, struct gencodeToPubMed *ret);
+/* Load a row from gencodeToPubMed table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeToPubMed *gencodeToPubMedLoad(char **row);
+/* Load a gencodeToPubMed from row fetched with select * from gencodeToPubMed
+ * from database.  Dispose of this with gencodeToPubMedFree(). */
+
+struct gencodeToPubMed *gencodeToPubMedLoadAll(char *fileName);
+/* Load all gencodeToPubMed from whitespace-separated file.
+ * Dispose of this with gencodeToPubMedFreeList(). */
+
+struct gencodeToPubMed *gencodeToPubMedLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeToPubMed from chopper separated file.
+ * Dispose of this with gencodeToPubMedFreeList(). */
+
+#define gencodeToPubMedLoadAllByTab(a) gencodeToPubMedLoadAllByChar(a, '\t');
+/* Load all gencodeToPubMed from tab separated file.
+ * Dispose of this with gencodeToPubMedFreeList(). */
+
+struct gencodeToPubMed *gencodeToPubMedCommaIn(char **pS, struct gencodeToPubMed *ret);
+/* Create a gencodeToPubMed out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeToPubMed */
+
+void gencodeToPubMedFree(struct gencodeToPubMed **pEl);
+/* Free a single dynamically allocated gencodeToPubMed such as created
+ * with gencodeToPubMedLoad(). */
+
+void gencodeToPubMedFreeList(struct gencodeToPubMed **pList);
+/* Free a list of dynamically allocated gencodeToPubMed's */
+
+void gencodeToPubMedOutput(struct gencodeToPubMed *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeToPubMed.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeToPubMedTabOut(el,f) gencodeToPubMedOutput(el,f,'\t','\n');
+/* Print out gencodeToPubMed as a line in a tab-separated file. */
+
+#define gencodeToPubMedCommaOut(el,f) gencodeToPubMedOutput(el,f,',',',');
+/* Print out gencodeToPubMed as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETOPUBMED_H */
+