95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeToUniProt.h src/hg/inc/gencodeToUniProt.h
new file mode 100644
index 0000000..d1106c6
--- /dev/null
+++ src/hg/inc/gencodeToUniProt.h
@@ -0,0 +1,71 @@
+/* gencodeToUniProt.h was originally generated by the autoSql program, which also 
+ * generated gencodeToUniProt.c and gencodeToUniProt.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETOUNIPROT_H
+#define GENCODETOUNIPROT_H
+
+#define GENCODETOUNIPROT_NUM_COLS 4
+
+extern char *gencodeToUniProtCommaSepFieldNames;
+
+enum gencodeToUniProtDataset
+    {
+    gencodeToUniProtSwissProt = 0,
+    gencodeToUniProtTrEMBL = 1,
+    };
+struct gencodeToUniProt
+/* GENCODE transcript to UniProt peptide mapping */
+    {
+    struct gencodeToUniProt *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *acc;	/* UniProt/Swiss-Prot accession */
+    char *name;	/* UniProt/Swiss-Prot entry name */
+    enum gencodeToUniProtDataset dataset;	/* UniProt dataset */
+    };
+
+void gencodeToUniProtStaticLoad(char **row, struct gencodeToUniProt *ret);
+/* Load a row from gencodeToUniProt table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeToUniProt *gencodeToUniProtLoad(char **row);
+/* Load a gencodeToUniProt from row fetched with select * from gencodeToUniProt
+ * from database.  Dispose of this with gencodeToUniProtFree(). */
+
+struct gencodeToUniProt *gencodeToUniProtLoadAll(char *fileName);
+/* Load all gencodeToUniProt from whitespace-separated file.
+ * Dispose of this with gencodeToUniProtFreeList(). */
+
+struct gencodeToUniProt *gencodeToUniProtLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeToUniProt from chopper separated file.
+ * Dispose of this with gencodeToUniProtFreeList(). */
+
+#define gencodeToUniProtLoadAllByTab(a) gencodeToUniProtLoadAllByChar(a, '\t');
+/* Load all gencodeToUniProt from tab separated file.
+ * Dispose of this with gencodeToUniProtFreeList(). */
+
+struct gencodeToUniProt *gencodeToUniProtCommaIn(char **pS, struct gencodeToUniProt *ret);
+/* Create a gencodeToUniProt out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeToUniProt */
+
+void gencodeToUniProtFree(struct gencodeToUniProt **pEl);
+/* Free a single dynamically allocated gencodeToUniProt such as created
+ * with gencodeToUniProtLoad(). */
+
+void gencodeToUniProtFreeList(struct gencodeToUniProt **pList);
+/* Free a list of dynamically allocated gencodeToUniProt's */
+
+void gencodeToUniProtOutput(struct gencodeToUniProt *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeToUniProt.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeToUniProtTabOut(el,f) gencodeToUniProtOutput(el,f,'\t','\n');
+/* Print out gencodeToUniProt as a line in a tab-separated file. */
+
+#define gencodeToUniProtCommaOut(el,f) gencodeToUniProtOutput(el,f,',',',');
+/* Print out gencodeToUniProt as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETOUNIPROT_H */
+