95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeAnnotationRemark.h src/hg/inc/gencodeAnnotationRemark.h
new file mode 100644
index 0000000..472a359
--- /dev/null
+++ src/hg/inc/gencodeAnnotationRemark.h
@@ -0,0 +1,64 @@
+/* gencodeAnnotationRemark.h was originally generated by the autoSql program, which also 
+ * generated gencodeAnnotationRemark.c and gencodeAnnotationRemark.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODEANNOTATIONREMARK_H
+#define GENCODEANNOTATIONREMARK_H
+
+#define GENCODEANNOTATIONREMARK_NUM_COLS 2
+
+extern char *gencodeAnnotationRemarkCommaSepFieldNames;
+
+struct gencodeAnnotationRemark
+/* Annotation remarks */
+    {
+    struct gencodeAnnotationRemark *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *remark;	/* Comment by annotator */
+    };
+
+void gencodeAnnotationRemarkStaticLoad(char **row, struct gencodeAnnotationRemark *ret);
+/* Load a row from gencodeAnnotationRemark table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeAnnotationRemark *gencodeAnnotationRemarkLoad(char **row);
+/* Load a gencodeAnnotationRemark from row fetched with select * from gencodeAnnotationRemark
+ * from database.  Dispose of this with gencodeAnnotationRemarkFree(). */
+
+struct gencodeAnnotationRemark *gencodeAnnotationRemarkLoadAll(char *fileName);
+/* Load all gencodeAnnotationRemark from whitespace-separated file.
+ * Dispose of this with gencodeAnnotationRemarkFreeList(). */
+
+struct gencodeAnnotationRemark *gencodeAnnotationRemarkLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeAnnotationRemark from chopper separated file.
+ * Dispose of this with gencodeAnnotationRemarkFreeList(). */
+
+#define gencodeAnnotationRemarkLoadAllByTab(a) gencodeAnnotationRemarkLoadAllByChar(a, '\t');
+/* Load all gencodeAnnotationRemark from tab separated file.
+ * Dispose of this with gencodeAnnotationRemarkFreeList(). */
+
+struct gencodeAnnotationRemark *gencodeAnnotationRemarkCommaIn(char **pS, struct gencodeAnnotationRemark *ret);
+/* Create a gencodeAnnotationRemark out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeAnnotationRemark */
+
+void gencodeAnnotationRemarkFree(struct gencodeAnnotationRemark **pEl);
+/* Free a single dynamically allocated gencodeAnnotationRemark such as created
+ * with gencodeAnnotationRemarkLoad(). */
+
+void gencodeAnnotationRemarkFreeList(struct gencodeAnnotationRemark **pList);
+/* Free a list of dynamically allocated gencodeAnnotationRemark's */
+
+void gencodeAnnotationRemarkOutput(struct gencodeAnnotationRemark *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeAnnotationRemark.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeAnnotationRemarkTabOut(el,f) gencodeAnnotationRemarkOutput(el,f,'\t','\n');
+/* Print out gencodeAnnotationRemark as a line in a tab-separated file. */
+
+#define gencodeAnnotationRemarkCommaOut(el,f) gencodeAnnotationRemarkOutput(el,f,',',',');
+/* Print out gencodeAnnotationRemark as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODEANNOTATIONREMARK_H */
+