95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeExonSupport.h src/hg/inc/gencodeExonSupport.h
new file mode 100644
index 0000000..a68f038
--- /dev/null
+++ src/hg/inc/gencodeExonSupport.h
@@ -0,0 +1,69 @@
+/* gencodeExonSupport.h was originally generated by the autoSql program, which also 
+ * generated gencodeExonSupport.c and gencodeExonSupport.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODEEXONSUPPORT_H
+#define GENCODEEXONSUPPORT_H
+
+#define GENCODEEXONSUPPORT_NUM_COLS 7
+
+extern char *gencodeExonSupportCommaSepFieldNames;
+
+struct gencodeExonSupport
+/* GENCODE exon support from other datasets */
+    {
+    struct gencodeExonSupport *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *seqId;	/* Identifier of sequence supporting transcript */
+    char *seqSrc;	/* Source of supporting sequence */
+    char *exonId;	/* GENCODE exon identifier (not stable) */
+    char *chrom;	/* Chromosome */
+    unsigned chromStart;	/* Start position in chromosome */
+    unsigned chromEnd;	/* End position in chromosome */
+    };
+
+void gencodeExonSupportStaticLoad(char **row, struct gencodeExonSupport *ret);
+/* Load a row from gencodeExonSupport table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeExonSupport *gencodeExonSupportLoad(char **row);
+/* Load a gencodeExonSupport from row fetched with select * from gencodeExonSupport
+ * from database.  Dispose of this with gencodeExonSupportFree(). */
+
+struct gencodeExonSupport *gencodeExonSupportLoadAll(char *fileName);
+/* Load all gencodeExonSupport from whitespace-separated file.
+ * Dispose of this with gencodeExonSupportFreeList(). */
+
+struct gencodeExonSupport *gencodeExonSupportLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeExonSupport from chopper separated file.
+ * Dispose of this with gencodeExonSupportFreeList(). */
+
+#define gencodeExonSupportLoadAllByTab(a) gencodeExonSupportLoadAllByChar(a, '\t');
+/* Load all gencodeExonSupport from tab separated file.
+ * Dispose of this with gencodeExonSupportFreeList(). */
+
+struct gencodeExonSupport *gencodeExonSupportCommaIn(char **pS, struct gencodeExonSupport *ret);
+/* Create a gencodeExonSupport out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeExonSupport */
+
+void gencodeExonSupportFree(struct gencodeExonSupport **pEl);
+/* Free a single dynamically allocated gencodeExonSupport such as created
+ * with gencodeExonSupportLoad(). */
+
+void gencodeExonSupportFreeList(struct gencodeExonSupport **pList);
+/* Free a list of dynamically allocated gencodeExonSupport's */
+
+void gencodeExonSupportOutput(struct gencodeExonSupport *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeExonSupport.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeExonSupportTabOut(el,f) gencodeExonSupportOutput(el,f,'\t','\n');
+/* Print out gencodeExonSupport as a line in a tab-separated file. */
+
+#define gencodeExonSupportCommaOut(el,f) gencodeExonSupportOutput(el,f,',',',');
+/* Print out gencodeExonSupport as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODEEXONSUPPORT_H */
+