95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeGeneSource.h src/hg/inc/gencodeGeneSource.h
new file mode 100644
index 0000000..fe547bc
--- /dev/null
+++ src/hg/inc/gencodeGeneSource.h
@@ -0,0 +1,64 @@
+/* gencodeGeneSource.h was originally generated by the autoSql program, which also 
+ * generated gencodeGeneSource.c and gencodeGeneSource.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODEGENESOURCE_H
+#define GENCODEGENESOURCE_H
+
+#define GENCODEGENESOURCE_NUM_COLS 2
+
+extern char *gencodeGeneSourceCommaSepFieldNames;
+
+struct gencodeGeneSource
+/* The source of Gencode gene annotation */
+    {
+    struct gencodeGeneSource *next;  /* Next in singly linked list. */
+    char *geneId;	/* GENCODE gene identifier */
+    char *source;	/* Source of gene */
+    };
+
+void gencodeGeneSourceStaticLoad(char **row, struct gencodeGeneSource *ret);
+/* Load a row from gencodeGeneSource table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeGeneSource *gencodeGeneSourceLoad(char **row);
+/* Load a gencodeGeneSource from row fetched with select * from gencodeGeneSource
+ * from database.  Dispose of this with gencodeGeneSourceFree(). */
+
+struct gencodeGeneSource *gencodeGeneSourceLoadAll(char *fileName);
+/* Load all gencodeGeneSource from whitespace-separated file.
+ * Dispose of this with gencodeGeneSourceFreeList(). */
+
+struct gencodeGeneSource *gencodeGeneSourceLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeGeneSource from chopper separated file.
+ * Dispose of this with gencodeGeneSourceFreeList(). */
+
+#define gencodeGeneSourceLoadAllByTab(a) gencodeGeneSourceLoadAllByChar(a, '\t');
+/* Load all gencodeGeneSource from tab separated file.
+ * Dispose of this with gencodeGeneSourceFreeList(). */
+
+struct gencodeGeneSource *gencodeGeneSourceCommaIn(char **pS, struct gencodeGeneSource *ret);
+/* Create a gencodeGeneSource out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeGeneSource */
+
+void gencodeGeneSourceFree(struct gencodeGeneSource **pEl);
+/* Free a single dynamically allocated gencodeGeneSource such as created
+ * with gencodeGeneSourceLoad(). */
+
+void gencodeGeneSourceFreeList(struct gencodeGeneSource **pList);
+/* Free a list of dynamically allocated gencodeGeneSource's */
+
+void gencodeGeneSourceOutput(struct gencodeGeneSource *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeGeneSource.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeGeneSourceTabOut(el,f) gencodeGeneSourceOutput(el,f,'\t','\n');
+/* Print out gencodeGeneSource as a line in a tab-separated file. */
+
+#define gencodeGeneSourceCommaOut(el,f) gencodeGeneSourceOutput(el,f,',',',');
+/* Print out gencodeGeneSource as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODEGENESOURCE_H */
+