95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeToEntrezGene.h src/hg/inc/gencodeToEntrezGene.h
new file mode 100644
index 0000000..daf5c76
--- /dev/null
+++ src/hg/inc/gencodeToEntrezGene.h
@@ -0,0 +1,64 @@
+/* gencodeToEntrezGene.h was originally generated by the autoSql program, which also 
+ * generated gencodeToEntrezGene.c and gencodeToEntrezGene.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETOENTREZGENE_H
+#define GENCODETOENTREZGENE_H
+
+#define GENCODETOENTREZGENE_NUM_COLS 2
+
+extern char *gencodeToEntrezGeneCommaSepFieldNames;
+
+struct gencodeToEntrezGene
+/* The NCBI Entrez gene id associated with GENCODE transcript annotation */
+    {
+    struct gencodeToEntrezGene *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    int entrezGeneId;	/* Entrez gene id */
+    };
+
+void gencodeToEntrezGeneStaticLoad(char **row, struct gencodeToEntrezGene *ret);
+/* Load a row from gencodeToEntrezGene table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeToEntrezGene *gencodeToEntrezGeneLoad(char **row);
+/* Load a gencodeToEntrezGene from row fetched with select * from gencodeToEntrezGene
+ * from database.  Dispose of this with gencodeToEntrezGeneFree(). */
+
+struct gencodeToEntrezGene *gencodeToEntrezGeneLoadAll(char *fileName);
+/* Load all gencodeToEntrezGene from whitespace-separated file.
+ * Dispose of this with gencodeToEntrezGeneFreeList(). */
+
+struct gencodeToEntrezGene *gencodeToEntrezGeneLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeToEntrezGene from chopper separated file.
+ * Dispose of this with gencodeToEntrezGeneFreeList(). */
+
+#define gencodeToEntrezGeneLoadAllByTab(a) gencodeToEntrezGeneLoadAllByChar(a, '\t');
+/* Load all gencodeToEntrezGene from tab separated file.
+ * Dispose of this with gencodeToEntrezGeneFreeList(). */
+
+struct gencodeToEntrezGene *gencodeToEntrezGeneCommaIn(char **pS, struct gencodeToEntrezGene *ret);
+/* Create a gencodeToEntrezGene out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeToEntrezGene */
+
+void gencodeToEntrezGeneFree(struct gencodeToEntrezGene **pEl);
+/* Free a single dynamically allocated gencodeToEntrezGene such as created
+ * with gencodeToEntrezGeneLoad(). */
+
+void gencodeToEntrezGeneFreeList(struct gencodeToEntrezGene **pList);
+/* Free a list of dynamically allocated gencodeToEntrezGene's */
+
+void gencodeToEntrezGeneOutput(struct gencodeToEntrezGene *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeToEntrezGene.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeToEntrezGeneTabOut(el,f) gencodeToEntrezGeneOutput(el,f,'\t','\n');
+/* Print out gencodeToEntrezGene as a line in a tab-separated file. */
+
+#define gencodeToEntrezGeneCommaOut(el,f) gencodeToEntrezGeneOutput(el,f,',',',');
+/* Print out gencodeToEntrezGene as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETOENTREZGENE_H */
+