95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeToGeneSymbol.h src/hg/inc/gencodeToGeneSymbol.h
new file mode 100644
index 0000000..a5cd68b
--- /dev/null
+++ src/hg/inc/gencodeToGeneSymbol.h
@@ -0,0 +1,65 @@
+/* gencodeToGeneSymbol.h was originally generated by the autoSql program, which also 
+ * generated gencodeToGeneSymbol.c and gencodeToGeneSymbol.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETOGENESYMBOL_H
+#define GENCODETOGENESYMBOL_H
+
+#define GENCODETOGENESYMBOL_NUM_COLS 3
+
+extern char *gencodeToGeneSymbolCommaSepFieldNames;
+
+struct gencodeToGeneSymbol
+/* GENCODE transcript to official gene symbol.  For human, this is the HUGO Gene Nomenclature Committee (HGNC) gene symbo.  For mouse, this is the Mouse Genome Informatics (MGI) gene symbol. */
+    {
+    struct gencodeToGeneSymbol *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *symbol;	/* HGNC/MGI gene symbol */
+    char *geneId;	/* HGNC/MGI symbol id used by database */
+    };
+
+void gencodeToGeneSymbolStaticLoad(char **row, struct gencodeToGeneSymbol *ret);
+/* Load a row from gencodeToGeneSymbol table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeToGeneSymbol *gencodeToGeneSymbolLoad(char **row);
+/* Load a gencodeToGeneSymbol from row fetched with select * from gencodeToGeneSymbol
+ * from database.  Dispose of this with gencodeToGeneSymbolFree(). */
+
+struct gencodeToGeneSymbol *gencodeToGeneSymbolLoadAll(char *fileName);
+/* Load all gencodeToGeneSymbol from whitespace-separated file.
+ * Dispose of this with gencodeToGeneSymbolFreeList(). */
+
+struct gencodeToGeneSymbol *gencodeToGeneSymbolLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeToGeneSymbol from chopper separated file.
+ * Dispose of this with gencodeToGeneSymbolFreeList(). */
+
+#define gencodeToGeneSymbolLoadAllByTab(a) gencodeToGeneSymbolLoadAllByChar(a, '\t');
+/* Load all gencodeToGeneSymbol from tab separated file.
+ * Dispose of this with gencodeToGeneSymbolFreeList(). */
+
+struct gencodeToGeneSymbol *gencodeToGeneSymbolCommaIn(char **pS, struct gencodeToGeneSymbol *ret);
+/* Create a gencodeToGeneSymbol out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeToGeneSymbol */
+
+void gencodeToGeneSymbolFree(struct gencodeToGeneSymbol **pEl);
+/* Free a single dynamically allocated gencodeToGeneSymbol such as created
+ * with gencodeToGeneSymbolLoad(). */
+
+void gencodeToGeneSymbolFreeList(struct gencodeToGeneSymbol **pList);
+/* Free a list of dynamically allocated gencodeToGeneSymbol's */
+
+void gencodeToGeneSymbolOutput(struct gencodeToGeneSymbol *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeToGeneSymbol.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeToGeneSymbolTabOut(el,f) gencodeToGeneSymbolOutput(el,f,'\t','\n');
+/* Print out gencodeToGeneSymbol as a line in a tab-separated file. */
+
+#define gencodeToGeneSymbolCommaOut(el,f) gencodeToGeneSymbolOutput(el,f,',',',');
+/* Print out gencodeToGeneSymbol as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETOGENESYMBOL_H */
+