95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeTranscriptSource.h src/hg/inc/gencodeTranscriptSource.h
new file mode 100644
index 0000000..ba6f92c
--- /dev/null
+++ src/hg/inc/gencodeTranscriptSource.h
@@ -0,0 +1,64 @@
+/* gencodeTranscriptSource.h was originally generated by the autoSql program, which also 
+ * generated gencodeTranscriptSource.c and gencodeTranscriptSource.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETRANSCRIPTSOURCE_H
+#define GENCODETRANSCRIPTSOURCE_H
+
+#define GENCODETRANSCRIPTSOURCE_NUM_COLS 2
+
+extern char *gencodeTranscriptSourceCommaSepFieldNames;
+
+struct gencodeTranscriptSource
+/* The source of Gencode transcript annotation */
+    {
+    struct gencodeTranscriptSource *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *source;	/* Source of transcript */
+    };
+
+void gencodeTranscriptSourceStaticLoad(char **row, struct gencodeTranscriptSource *ret);
+/* Load a row from gencodeTranscriptSource table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeTranscriptSource *gencodeTranscriptSourceLoad(char **row);
+/* Load a gencodeTranscriptSource from row fetched with select * from gencodeTranscriptSource
+ * from database.  Dispose of this with gencodeTranscriptSourceFree(). */
+
+struct gencodeTranscriptSource *gencodeTranscriptSourceLoadAll(char *fileName);
+/* Load all gencodeTranscriptSource from whitespace-separated file.
+ * Dispose of this with gencodeTranscriptSourceFreeList(). */
+
+struct gencodeTranscriptSource *gencodeTranscriptSourceLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeTranscriptSource from chopper separated file.
+ * Dispose of this with gencodeTranscriptSourceFreeList(). */
+
+#define gencodeTranscriptSourceLoadAllByTab(a) gencodeTranscriptSourceLoadAllByChar(a, '\t');
+/* Load all gencodeTranscriptSource from tab separated file.
+ * Dispose of this with gencodeTranscriptSourceFreeList(). */
+
+struct gencodeTranscriptSource *gencodeTranscriptSourceCommaIn(char **pS, struct gencodeTranscriptSource *ret);
+/* Create a gencodeTranscriptSource out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeTranscriptSource */
+
+void gencodeTranscriptSourceFree(struct gencodeTranscriptSource **pEl);
+/* Free a single dynamically allocated gencodeTranscriptSource such as created
+ * with gencodeTranscriptSourceLoad(). */
+
+void gencodeTranscriptSourceFreeList(struct gencodeTranscriptSource **pList);
+/* Free a list of dynamically allocated gencodeTranscriptSource's */
+
+void gencodeTranscriptSourceOutput(struct gencodeTranscriptSource *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeTranscriptSource.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeTranscriptSourceTabOut(el,f) gencodeTranscriptSourceOutput(el,f,'\t','\n');
+/* Print out gencodeTranscriptSource as a line in a tab-separated file. */
+
+#define gencodeTranscriptSourceCommaOut(el,f) gencodeTranscriptSourceOutput(el,f,',',',');
+/* Print out gencodeTranscriptSource as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETRANSCRIPTSOURCE_H */
+