95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/inc/gencodeTranscriptionSupportLevel.h src/hg/inc/gencodeTranscriptionSupportLevel.h
new file mode 100644
index 0000000..68fa2cf
--- /dev/null
+++ src/hg/inc/gencodeTranscriptionSupportLevel.h
@@ -0,0 +1,64 @@
+/* gencodeTranscriptionSupportLevel.h was originally generated by the autoSql program, which also 
+ * generated gencodeTranscriptionSupportLevel.c and gencodeTranscriptionSupportLevel.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GENCODETRANSCRIPTIONSUPPORTLEVEL_H
+#define GENCODETRANSCRIPTIONSUPPORTLEVEL_H
+
+#define GENCODETRANSCRIPTIONSUPPORTLEVEL_NUM_COLS 2
+
+extern char *gencodeTranscriptionSupportLevelCommaSepFieldNames;
+
+struct gencodeTranscriptionSupportLevel
+/* GENCODE transcription support level, computed from primary data */
+    {
+    struct gencodeTranscriptionSupportLevel *next;  /* Next in singly linked list. */
+    char *transcriptId;	/* GENCODE transcript identifier */
+    char *level;	/* support level, tsl1 is strongest support, tsl5 weakest, NA means not analyzed */
+    };
+
+void gencodeTranscriptionSupportLevelStaticLoad(char **row, struct gencodeTranscriptionSupportLevel *ret);
+/* Load a row from gencodeTranscriptionSupportLevel table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gencodeTranscriptionSupportLevel *gencodeTranscriptionSupportLevelLoad(char **row);
+/* Load a gencodeTranscriptionSupportLevel from row fetched with select * from gencodeTranscriptionSupportLevel
+ * from database.  Dispose of this with gencodeTranscriptionSupportLevelFree(). */
+
+struct gencodeTranscriptionSupportLevel *gencodeTranscriptionSupportLevelLoadAll(char *fileName);
+/* Load all gencodeTranscriptionSupportLevel from whitespace-separated file.
+ * Dispose of this with gencodeTranscriptionSupportLevelFreeList(). */
+
+struct gencodeTranscriptionSupportLevel *gencodeTranscriptionSupportLevelLoadAllByChar(char *fileName, char chopper);
+/* Load all gencodeTranscriptionSupportLevel from chopper separated file.
+ * Dispose of this with gencodeTranscriptionSupportLevelFreeList(). */
+
+#define gencodeTranscriptionSupportLevelLoadAllByTab(a) gencodeTranscriptionSupportLevelLoadAllByChar(a, '\t');
+/* Load all gencodeTranscriptionSupportLevel from tab separated file.
+ * Dispose of this with gencodeTranscriptionSupportLevelFreeList(). */
+
+struct gencodeTranscriptionSupportLevel *gencodeTranscriptionSupportLevelCommaIn(char **pS, struct gencodeTranscriptionSupportLevel *ret);
+/* Create a gencodeTranscriptionSupportLevel out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeTranscriptionSupportLevel */
+
+void gencodeTranscriptionSupportLevelFree(struct gencodeTranscriptionSupportLevel **pEl);
+/* Free a single dynamically allocated gencodeTranscriptionSupportLevel such as created
+ * with gencodeTranscriptionSupportLevelLoad(). */
+
+void gencodeTranscriptionSupportLevelFreeList(struct gencodeTranscriptionSupportLevel **pList);
+/* Free a list of dynamically allocated gencodeTranscriptionSupportLevel's */
+
+void gencodeTranscriptionSupportLevelOutput(struct gencodeTranscriptionSupportLevel *el, FILE *f, char sep, char lastSep);
+/* Print out gencodeTranscriptionSupportLevel.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gencodeTranscriptionSupportLevelTabOut(el,f) gencodeTranscriptionSupportLevelOutput(el,f,'\t','\n');
+/* Print out gencodeTranscriptionSupportLevel as a line in a tab-separated file. */
+
+#define gencodeTranscriptionSupportLevelCommaOut(el,f) gencodeTranscriptionSupportLevelOutput(el,f,',',',');
+/* Print out gencodeTranscriptionSupportLevel as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* GENCODETRANSCRIPTIONSUPPORTLEVEL_H */
+