95efc27edf24bba8d0c7e53d2ef4aead59982826
braney
  Mon Jun 15 18:29:39 2020 -0700
Merging in our gencode merge code to master branch

diff --git src/hg/lib/gencodeTranscriptSupport.c src/hg/lib/gencodeTranscriptSupport.c
new file mode 100644
index 0000000..d3a6760
--- /dev/null
+++ src/hg/lib/gencodeTranscriptSupport.c
@@ -0,0 +1,134 @@
+/* gencodeTranscriptSupport.c was originally generated by the autoSql program, which also 
+ * generated gencodeTranscriptSupport.h and gencodeTranscriptSupport.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "gencodeTranscriptSupport.h"
+
+
+
+char *gencodeTranscriptSupportCommaSepFieldNames = "transcriptId,seqId,seqSrc";
+
+void gencodeTranscriptSupportStaticLoad(char **row, struct gencodeTranscriptSupport *ret)
+/* Load a row from gencodeTranscriptSupport table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->transcriptId = row[0];
+ret->seqId = row[1];
+ret->seqSrc = row[2];
+}
+
+struct gencodeTranscriptSupport *gencodeTranscriptSupportLoad(char **row)
+/* Load a gencodeTranscriptSupport from row fetched with select * from gencodeTranscriptSupport
+ * from database.  Dispose of this with gencodeTranscriptSupportFree(). */
+{
+struct gencodeTranscriptSupport *ret;
+
+AllocVar(ret);
+ret->transcriptId = cloneString(row[0]);
+ret->seqId = cloneString(row[1]);
+ret->seqSrc = cloneString(row[2]);
+return ret;
+}
+
+struct gencodeTranscriptSupport *gencodeTranscriptSupportLoadAll(char *fileName) 
+/* Load all gencodeTranscriptSupport from a whitespace-separated file.
+ * Dispose of this with gencodeTranscriptSupportFreeList(). */
+{
+struct gencodeTranscriptSupport *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileRow(lf, row))
+    {
+    el = gencodeTranscriptSupportLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gencodeTranscriptSupport *gencodeTranscriptSupportLoadAllByChar(char *fileName, char chopper) 
+/* Load all gencodeTranscriptSupport from a chopper separated file.
+ * Dispose of this with gencodeTranscriptSupportFreeList(). */
+{
+struct gencodeTranscriptSupport *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gencodeTranscriptSupportLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gencodeTranscriptSupport *gencodeTranscriptSupportCommaIn(char **pS, struct gencodeTranscriptSupport *ret)
+/* Create a gencodeTranscriptSupport out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gencodeTranscriptSupport */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->transcriptId = sqlStringComma(&s);
+ret->seqId = sqlStringComma(&s);
+ret->seqSrc = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void gencodeTranscriptSupportFree(struct gencodeTranscriptSupport **pEl)
+/* Free a single dynamically allocated gencodeTranscriptSupport such as created
+ * with gencodeTranscriptSupportLoad(). */
+{
+struct gencodeTranscriptSupport *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->transcriptId);
+freeMem(el->seqId);
+freeMem(el->seqSrc);
+freez(pEl);
+}
+
+void gencodeTranscriptSupportFreeList(struct gencodeTranscriptSupport **pList)
+/* Free a list of dynamically allocated gencodeTranscriptSupport's */
+{
+struct gencodeTranscriptSupport *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gencodeTranscriptSupportFree(&el);
+    }
+*pList = NULL;
+}
+
+void gencodeTranscriptSupportOutput(struct gencodeTranscriptSupport *el, FILE *f, char sep, char lastSep) 
+/* Print out gencodeTranscriptSupport.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->transcriptId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->seqId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->seqSrc);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+