a3c14fb7b09c470918286385c0351f3786d7d48e
chmalee
  Fri Jun 19 13:13:19 2020 -0700
Fixing up some clingen related filters and urls, refs #25562

diff --git src/hg/makeDb/trackDb/human/trackDb.clinGen.ra src/hg/makeDb/trackDb/human/trackDb.clinGen.ra
index 661a105..8592c4f 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinGen.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinGen.ra
@@ -13,46 +13,49 @@
     type bigBed 9 +
     itemRgb on
     compositeTrack on
     html clinGenDosage
 
         track clinGenHaplo
         parent dosageSensitivity
         shortLabel ClinGen Haploinsufficiency
         longLabel ClinGen Dosage Sensitivity Map - Haploinsufficiency
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb/$D/bbi/clinGen/clinGenHaplo.bb
         mouseOverField _mouseOver
         filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely
         filterLabel.haploScore Dosage Sensitivity Score
+        urls haploPMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" haploPMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" haploPMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$"
 
         track clinGenTriplo
         parent dosageSensitivity
         shortLabel ClinGen Triplosensitivity
         longLabel ClinGen Dosage Sensitivity Map - Triplosensitivity
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb//$D/bbi/clinGen/clinGenTriplo.bb
         mouseOverField _mouseOver
         filterValues.triploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely
         filterLabel.triploScore Dosage Sensitivity Score
+        urls triploPMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" triploPMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" triploPMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$"
 
     track clinGenCnv
     parent clinGenSuper off
     shortLabel ClinGen Structural Variants
     longLabel Clinical Genome Resource (ClinGen) Structural Variants
     html clinGenSv
     type bigBed 9 +
     itemRgb on
     visibility dense
     mergeSpannedItems off
     bigDataUrl /gbdb/$D/bbi/clinGen/clinGenCnv.bb
     mouseOverField _mouseOver
+    filterByRange.size on
     filterLabel.size Variant Size
     filterValues.variantType copy_number_loss|loss,copy_number_gain|gain
     filterLabel.variantType Variant Type
     filterValues.clinicalInterpretation Pathogenic|pathogenic,Benign|benign
     filterLabel.clinicalInterpretation Clinical Significance
     url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$
     urlLabel NCBI DbVar:
-    urls pubMed="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" clinGenId="https://dosage.clinicalgenome.org/clingen_region.cgi?id=$$&page=print"
+    urls pubMed="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" clinGenId="$$"