9aa8cb048fd8b72bb544b78d335dee347e8c207f galt Wed Jun 17 15:29:29 2020 -0700 Increment blat version number. Now we konw if blat version is 36x7 or newer, the compiler optimization bug should be fixed. refs #25700 diff --git src/blat/version.doc src/blat/version.doc index c0cc8a7..83ad720 100644 --- src/blat/version.doc +++ src/blat/version.doc @@ -1,23 +1,24 @@ 37: o (in 36x1) Fixed problem with -fastMap option that made it put in gaps in the allignment sometimes when a short mismatch would be a better choice. o (in 36x2) Fixed problem with -maxIntron set to non-default value on protein query. o (in 36x3) Added ipv6 support. o (in 36x4) Added _alt support. o (in 36x5) If ipv6 disabled, retries with ipv4-only socket. o (in 36x6) Added noSimpRepMask option to blat gfServer isPcr to skip simple repeat masking. + o (in 36x7) Fixed compiler optimization issue on mac 2020-06-17 in dlSort(). 36: o (in 35x1) added repMatch default values for tileSizes 16 to 18 in genoFind.c 35: o (in 34x1) Making total query output reporting a 64 bit number to avoid overflow when people using more than 4 gig of query sequence. o (in 34x2) Fixed -out=blast to use +/- instead of -/+ for non-translated. o (in 34x3) Fixed -minScore, filter was not working when over half query-size. o (in 34x4) Made it convert u's to t's for RNA sequence stuff. o (in 34x5) Made gfServer calculate repMatch based on stepSize/tileSize combination the way blat does rather than just being good for stepSize 11. o (in 34x6) Fixed negative strand pcr psl output o (in 34x7) Made it check and error out if the same name is reused in the target database. o (in 34x8) Truncate in output PCR primers that dangle off target chrom ends.