0c6145f99f76da49d5bbed9d2e775bb5a619c2ab hiram Wed Jun 17 14:08:34 2020 -0700 no need to sed names now that commonHtml.pm is used refs #25555 diff --git src/hg/makeDb/doc/asmHubs/asmHubs.mk src/hg/makeDb/doc/asmHubs/asmHubs.mk index ad54947..9d450cf 100644 --- src/hg/makeDb/doc/asmHubs/asmHubs.mk +++ src/hg/makeDb/doc/asmHubs/asmHubs.mk @@ -10,44 +10,44 @@ toolsDir=${HOME}/kent/src/hg/makeDb/doc/asmHubs all:: makeDirs mkGenomes symLinks hubIndex asmStats trackData hubTxt groupsTxt makeDirs: mkdir -p ${destDir} mkGenomes:: ${toolsDir}/mkGenomes.pl ${orderList} > ${destDir}/${genomesTxt}.txt symLinks:: ${toolsDir}/mkSymLinks.pl ${orderList} hubIndex:: - ${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} ${orderList} | sed -e 's#asmStats.html#${statsName}.html#; s#trackData.html#${dataName}.html#; s#${name}/hub.txt#${name}/${hubFile}.txt#;' > ${destDir}/${indexName}.html - sed -e "s#genome.ucsc.edu/h/#genome-test.gi.ucsc.edu/h/#g; s/hgdownload.soe/hgdownload-test.gi/g; s#/${indexName}.html#/${testIndexName}.html#; s#${name}/${hubFile}.txt#${name}/${testHubFile}.txt#; s/${statsName}/${testStatsName}/; s#${dataName}.html#${testDataName}.html#;" ${destDir}/${indexName}.html > ${destDir}/${testIndexName}.html + ${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} ${orderList} | sed -e 's#${name}/hub.txt#${name}/${hubFile}.txt#;' > ${destDir}/${indexName}.html + sed -e "s#genome.ucsc.edu/h/#genome-test.gi.ucsc.edu/h/#g; s/hgdownload.soe/hgdownload-test.gi/g; s#/${indexName}.html#/${testIndexName}.html#; s#${name}/${hubFile}.txt#${name}/${testHubFile}.txt#; s/asmStats/${testStatsName}/; s#${dataName}.html#${testDataName}.html#;" ${destDir}/${indexName}.html > ${destDir}/${testIndexName}.html chmod +x ${destDir}/${indexName}.html ${destDir}/${testIndexName}.html asmStats:: rm -f ${destDir}/${statsName}.html ${destDir}/${testStatsName}.html - ${toolsDir}/mkAsmStats.pl ${Name} ${name} ${orderList} | sed -e 's#index.html#${indexName}.html#; s#trackData.html#${dataName}.html#;' > ${destDir}/${statsName}.html + ${toolsDir}/mkAsmStats.pl ${Name} ${name} ${orderList} > ${destDir}/${statsName}.html sed -e "s/hgdownload.soe/hgdownload-test.gi/g; s/index.html/${testIndexName}.html/; s#/${statsName}#/${testStatsName}#; s#${dataName}.html#${testDataName}.html#;" ${destDir}/${statsName}.html > ${destDir}/${testStatsName}.html chmod +x ${destDir}/${statsName}.html ${destDir}/${testStatsName}.html # trackData makes different tables for the test vs. production version # mkHubIndex.pl and mkAsmStats.pl should do this too . . . TBD trackData:: - ${toolsDir}/trackData.pl ${Name} ${name} ${orderList} | sed -e 's#index.html#${indexName}.html#; s#asmStats.html#${statsName}.html#;' > ${destDir}/${dataName}.html + ${toolsDir}/trackData.pl ${Name} ${name} ${orderList} > ${destDir}/${dataName}.html ${toolsDir}/trackData.pl -test ${Name} ${name} ${orderList} | sed -e "s#testIndex.html#${testIndexName}.html#; s#testAsmStats.html#${testStatsName}.html#;" > ${destDir}/${testDataName}.html chmod +x ${destDir}/${dataName}.html chmod +x ${destDir}/${testDataName}.html hubTxt: rm -f ${destDir}/${hubFile}.txt sed -e "s#index.html#${indexName}.html#; s#genomes.txt#${genomesTxt}.txt#;" ${srcDir}/hub.txt > ${destDir}/${hubFile}.txt sed -e 's/index.html/${testIndexName}.html/; s#genomes.txt#${genomesTxt}.txt#;' ${srcDir}/hub.txt > ${destDir}/${testHubFile}.txt # all hubs have the same set of groups, no need for any name customization groupsTxt: rm -f ${destDir}/groups.txt cp -p ${toolsDir}/groups.txt ${destDir}/groups.txt clean::