76fba02a1a3d0f8a66beebaafce75b2770407522
hiram
  Tue Jun 16 12:54:12 2020 -0700
liftOvers to panPan3 refs #25720

diff --git src/hg/makeDb/doc/panPan1.txt src/hg/makeDb/doc/panPan1.txt
index 0ac8742..fc10a5f 100644
--- src/hg/makeDb/doc/panPan1.txt
+++ src/hg/makeDb/doc/panPan1.txt
@@ -3171,15 +3171,34 @@
 
     doSameSpeciesLiftOver.pl -verbose=2 \
         -debug -ooc=/hive/data/genomes/panPan1/jkStuff/panPan1.11.ooc \
         -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
          panPan1 panPan2
 
     time (doSameSpeciesLiftOver.pl -verbose=2 \
         -ooc=/hive/data/genomes/panPan1/jkStuff/panPan1.11.ooc \
         -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
          panPan1 panPan2) > doLiftOverToPanPan2.log 2>&1
     # real    339m4.444s
 
     # verify this functions in the genome browser from panPan1 to panPan2
 
 ##############################################################################
+# LIFTOVER TO panPan3 (DONE - 2020-06-15 - Hiram)
+    ssh hgwdev
+    mkdir /hive/data/genomes/panPan1/bed/blat.panPan3.2020-06-15
+    cd /hive/data/genomes/panPan1/bed/blat.panPan3.2020-06-15
+
+    doSameSpeciesLiftOver.pl -verbose=2 \
+        -debug -ooc=/hive/data/genomes/panPan1/jkStuff/panPan1.11.ooc \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+         panPan1 panPan3
+
+    time (doSameSpeciesLiftOver.pl -verbose=2 \
+        -ooc=/hive/data/genomes/panPan1/jkStuff/panPan1.11.ooc \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+         panPan1 panPan3) > doLiftOverToPanPan3.log 2>&1
+    # real    483m25.092s
+
+    # verify this functions in the genome browser from panPan1 to panPan3
+
+##############################################################################