d052043384f869056aa55296e967077b9afb5970
lrnassar
  Thu Jun 18 16:58:38 2020 -0700
Releasing updated chain self tracks refs #24695

diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html
index 595987b..346d620 100755
--- src/hg/htdocs/goldenPath/newsarch.html
+++ src/hg/htdocs/goldenPath/newsarch.html
@@ -39,30 +39,49 @@
     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2005">2005 News</a></li>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2020 archived news ============= -->
 <a name="2020"></a>
+
+<a name="061920"></a>
+<h2>Jun. 19, 2020 &nbsp;&nbsp; Updated Self Chain track for human (GRCh38/hg38)</h2>
+<p>
+We have updated the <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&c=chr16&g=chainSelf">
+Self Chain</a> track for the human GRCh38/hg38 assembly. The Self Chain track shows
+alignments of the human genome with itself, using a gap scoring system that allows longer
+gaps than traditional affine gap scoring systems. After filtering out the alignments produced
+when identical locations of the genome map to one another (e.g. chrN mapping to chrN), the
+remaining alignments point out areas of duplication within the human genome.</p>
+<p>
+The updated
+track now includes 33,039,051 chains, and should provide improved sensitivity for pseudogenes
+and other homologous regions. For more information, see the track <a target="_blank" 
+href="/cgi-bin/hgTrackUi?db=hg38&c=chr16&g=chainSelf">description page</a>.</p>
+<p>
+We would like to thank Angie Hinrichs, Anna Benet-Pages, and Lou Nassar for the development
+and release of this track.</p>
+
 <a name="061820"></a>
 <h2>Jun. 18, 2020 &nbsp;&nbsp; New ENCODE cCREs track available for human and mouse (hg38 and mm10)
 </h2>
 <p>
 We are pleased to announce the <em>ENCODE Registry of candidate cis-Regulatory Elements</em> (cCREs)
 track for the human and mouse genomes
 (<a href="../../cgi-bin/hgTrackUi?db=hg38&c=chrX&g=encodeCcreCombined"
 target="_blank">GRCh37/hg19</a> and
 <a href="../../cgi-bin/hgTrackUi?db=mm10&c=chrX&g=encodeCcreCombined"
 target="_blank">GRCm38/mm10</a>).
 cCREs are the subset of representative DNase hypersensitive sites across ENCODE and Roadmap
 Epigenomics samples that are supported by either histone modifications (H3K4me3 and H3K27ac) or
 CTCF-binding data. The Registry of cCREs is one of the core components of the integrative level of
 the <a href="https://www.encodeproject.org/" target="_blank">ENCODE Encyclopedia of DNA
 Elements</a>. A total of 926,535 elements for human and 339,815 elements for mouse were identified
@@ -651,31 +670,31 @@
 href="https://gnomad.broadinstitute.org/faq">gnomAD</a> site. 
 </p>
 
 <p class="text-center">
   <img class='text-center' src="../images/GnomadConstraintStructruralVarRelease.PNG"  width='80%' 
 alt="Example of Constraint Metrics and Structural Variants tracks">
 </p>
 
 <p>
 We would like to thank the <a target="_blank"
 href="https://gnomad.broadinstitute.org">Genome Aggregation Database Consortium</a> for making
 these data available. We would also like to thank Christopher Lee, Maximilian Haeussler, Lou Nassar,
 Jairo Navarro, Robert Kuhn and Anna Benet-Pages for their effort in the creation of these tracks.
 </p>
 
-<a name="042020"></a
+<a name="042020"></a>
 <h2>Apr. 20, 2020 &nbsp;&nbsp; New video on the Browser's YouTube channel</h2>
 
 <p>
 We have released a new video to the Browser's
 <a href = "https://www.youtube.com/channel/UCQnUJepyNOw0p8s2otX4RYQ/videos"
 target = _blank>YouTube channel</a>.
 </p>
 
 <p>
    <b> &nbsp; &nbsp; Browser Basics, Part Two &mdash; Configuring the Browser </b>
 </p>
 
 <p>
 This <a href =
 "https://bit.ly/ucscVid18" target = _blank>video</a>