a7cc65d78d137b46de65297827017cf637a80014 abenetpa Fri Jun 5 13:41:27 2020 -0700 changed tracks and filters names refs #25562 diff --git src/hg/makeDb/trackDb/human/trackDb.clinGen.ra src/hg/makeDb/trackDb/human/trackDb.clinGen.ra index fa8f8a5..baf0b3a 100644 --- src/hg/makeDb/trackDb/human/trackDb.clinGen.ra +++ src/hg/makeDb/trackDb/human/trackDb.clinGen.ra @@ -1,55 +1,55 @@ track clinGenSuper shortLabel ClinGen longLabel Clinical Genome Resource group phenDis superTrack on track dosageSensitivity parent clinGenSuper on shortLabel ClinGen Dosage Sensitivity - longLabel Clinical Genome Resource Dosage Sensitivity + longLabel Clinical Genome Resource Dosage Sensitivity Map visibility pack type bigBed 9 + itemRgb on compositeTrack on track clinGenHaplo parent dosageSensitivity - shortLabel ClinGen Haplo Insufficiency - longLabel ClinGen Haplo Insufficiency + shortLabel ClinGen Haploinsufficiency + longLabel ClinGen Dosage Sensitivity Map - Haploinsufficiency visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/clinGen/clinGenHaplo.bb mouseOverField _mouseOver filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely - filterLabel.haploScore Haplosensitivity Score + filterLabel.haploScore Dosage Sensitivity Score track clinGenTriplo parent dosageSensitivity - shortLabel ClinGen Triplo Sensitivity - longLabel ClinGen Triplo Sensitivity + shortLabel ClinGen Triplosensitivity + longLabel ClinGen Dosage Sensitivity Map - Triplosensitivity visibility dense type bigBed 9 + bigDataUrl /gbdb//$D/bbi/clinGen/clinGenTriplo.bb mouseOverField _mouseOver filterValues.triploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely - filterLabel.triploScore Triplosensitivity Score + filterLabel.triploScore Dosage Sensitivity Score track clinGenCnv parent clinGenSuper off - shortLabel ClinGen Copy Number Variants - longLabel Clinical Genome Resource Copy Number Variants + shortLabel ClinGen Structural Variants + longLabel Clinical Genome Resource Structural Variants type bigBed 9 + itemRgb on visibility dense mergeSpannedItems off bigDataUrl /gbdb/$D/bbi/clinGen/clinGenCnv.bb mouseOverField _mouseOver filterLabel.size Variant Size filterValues.variantType copy_number_loss|loss,copy_number_gain|gain - filterLabel.variantType Copy Number Type (gain or loss) + filterLabel.variantType Variant Type filterValues.clinicalInterpretation Pathogenic|pathogenic,Benign|benign - filterLabel.clinicalInterpretation Benign or Pathogenic + filterLabel.clinicalInterpretation Clinical Significance url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ urlLabel NCBI DbVar: urls pubMed="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" clinGenId="https://dosage.clinicalgenome.org/clingen_region.cgi?id=$$&page=print"