dc9cd71799d3ded4fec70c2156cebfcc7118cbc8
braney
  Mon Jun 1 13:29:10 2020 -0700
fix bug where 1bp exons weren't being counted.

diff --git src/hg/lib/mafGene.c src/hg/lib/mafGene.c
index 7a545b9..4fea9e9 100644
--- src/hg/lib/mafGene.c
+++ src/hg/lib/mafGene.c
@@ -257,34 +257,31 @@
 
 return siList;
 }
 
 
 static void outSpeciesExons(FILE *f, char *dbName, struct speciesInfo *si, 
     struct exonInfo *giList, boolean doBlank, boolean doTable, boolean doUniq, int numCols)
 {
 int exonNum = 1;
 struct dnaSeq thisSeq;
 aaSeq *outSeq;
 int exonCount = 0;
 struct exonInfo *gi = giList;
 
 for(; gi; gi = gi->next)
-    {
-    if (gi->exonSize > 1)
     exonCount++;
-    }
 
 for(gi = giList; gi; gi = gi->next, exonNum++)
     {
     struct speciesInfo *siTemp = si;
     
     if (gi->exonSize == 1)
         {
 	siTemp->curPosString = siTemp->curPosString->next;
 	continue;
         }
 
     for(; siTemp ; siTemp = siTemp->next)
 	{
 	char *ptr = exonBuffer;